Literature DB >> 18093926

A synthetic host-guest system achieves avidin-biotin affinity by overcoming enthalpy-entropy compensation.

Mikhail V Rekharsky1, Tadashi Mori, Cheng Yang, Young Ho Ko, N Selvapalam, Hyunuk Kim, David Sobransingh, Angel E Kaifer, Simin Liu, Lyle Isaacs, Wei Chen, Sarvin Moghaddam, Michael K Gilson, Kimoon Kim, Yoshihisa Inoue.   

Abstract

The molecular host cucurbit[7]uril forms an extremely stable inclusion complex with the dicationic ferrocene derivative bis(trimethylammoniomethyl)ferrocene in aqueous solution. The equilibrium association constant for this host-guest pair is 3 x 10(15) M(-1) (K(d) = 3 x 10(-16) M), equivalent to that exhibited by the avidin-biotin pair. Although purely synthetic systems with larger association constants have been reported, the present one is unique because it does not rely on polyvalency. Instead, it achieves its extreme affinity by overcoming the compensatory enthalpy-entropy relationship usually observed in supramolecular complexes. Its disproportionately low entropic cost is traced to extensive host desolvation and to the rigidity of both the host and the guest.

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Year:  2007        PMID: 18093926      PMCID: PMC2410071          DOI: 10.1073/pnas.0706407105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  16 in total

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Authors:  Mikhail V. Rekharsky; Yoshihisa Inoue
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Review 2.  Binding affinities of host-guest, protein-ligand, and protein-transition-state complexes.

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Authors:  Chia-En Chang; Michael K Gilson
Journal:  J Am Chem Soc       Date:  2004-10-13       Impact factor: 15.419

5.  Complexation of ferrocene derivatives by the cucurbit[7]uril host: a comparative study of the cucurbituril and cyclodextrin host families.

Authors:  Woo Sung Jeon; Kwangyul Moon; Sang Hyun Park; Hyungpil Chun; Young Ho Ko; Jin Yong Lee; Eun Sung Lee; S Samal; N Selvapalam; Mikhail V Rekharsky; Vladimir Sindelar; David Sobransingh; Yoshihisa Inoue; Angel E Kaifer; Kimoon Kim
Journal:  J Am Chem Soc       Date:  2005-09-21       Impact factor: 15.419

Review 6.  Understanding noncovalent interactions: ligand binding energy and catalytic efficiency from ligand-induced reductions in motion within receptors and enzymes.

Authors:  Dudley H Williams; Elaine Stephens; Dominic P O'Brien; Min Zhou
Journal:  Angew Chem Int Ed Engl       Date:  2004-12-10       Impact factor: 15.336

Review 7.  The cucurbit[n]uril family.

Authors:  Jason Lagona; Pritam Mukhopadhyay; Sriparna Chakrabarti; Lyle Isaacs
Journal:  Angew Chem Int Ed Engl       Date:  2005-08-05       Impact factor: 15.336

8.  Concepts in receptor optimization: targeting the RGD peptide.

Authors:  Wei Chen; Chia-en Chang; Michael K Gilson
Journal:  J Am Chem Soc       Date:  2006-04-12       Impact factor: 15.419

9.  Thermodynamics of the binding of biotin and some analogues by avidin.

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Journal:  J Am Chem Soc       Date:  2005-11-16       Impact factor: 15.419

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  86 in total

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Review 2.  Prediction of protein-ligand binding affinity by free energy simulations: assumptions, pitfalls and expectations.

Authors:  Julien Michel; Jonathan W Essex
Journal:  J Comput Aided Mol Des       Date:  2010-05-28       Impact factor: 3.686

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4.  Molecular recognition of organic ammonium ions in solution using synthetic receptors.

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5.  Acyclic Cucurbit[n]uril-Type Molecular Container Enables Systemic Delivery of Effective Doses of Albendazole for Treatment of SK-OV-3 Xenograft Tumors.

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6.  Synthesis of a Disulfonated Derivative of Cucurbit[7]uril and Investigations of its Ability to Solubilize Insoluble Drugs.

Authors:  Elizabeth L Robinson; Peter Y Zavalij; Lyle Isaacs
Journal:  Supramol Chem       Date:  2015-05-01       Impact factor: 1.688

7.  Encapsulation of alkyl and aryl derivatives of quaternary ammonium cations within cucurbit[n]uril (n = 6,7) and their inverted diastereomers: density functional investigations.

Authors:  Ishita A Raja; Vivekanand V Gobre; Rahul V Pinjari; Shridhar P Gejji
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8.  LS-VISM: A software package for analysis of biomolecular solvation.

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9.  Binding enthalpy calculations for a neutral host-guest pair yield widely divergent salt effects across water models.

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10.  Beyond picomolar affinities: quantitative aspects of noncovalent and covalent binding of drugs to proteins.

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