Literature DB >> 28190935

Reassignment of the absolute configuration of plakinidone from the sponge consortium Plakortis halichondrioides-Xestospongia deweerdtae using a combination of synthesis and a chiroptical approach.

Carlos Jiménez-Romero1, Joanna E Rode2, Abimael D Rodríguez1.   

Abstract

Recent work by Wu et al. in connection with the first synthesis of the marine natural product plakinidone revealed that the most salient feature of its purported structure, a six-membered perlactone moiety, was in fact a five-membered lactone, i.e. a 3-methyl-4-hydroxy-2(5H)-furanone or tetronic acid ring. With the planar structure of plakinidone confidently revised, we undertook a new investigation to unambiguously establish its absolute configuration. Upon preparing two stable derivatives 1 and 5 from a sample of naturally occurring plakinidone extracted from the sponge association Plakortis halichondriodes-Xetospongia deweerdtae, the absolute configuration was assigned by synthesis and vibrational and electronic circular dichroism (VCD and ECD) measurements in combination with density functional theory calculations at the B3LYP/aug-cc-pVDZ/PCM(CH3CN) level of theory. Our combined efforts and the agreement between the experimental and calculated VCD/ECD spectra of 1 revealed that the absolute configuration of plakinidone was in fact (11S,17R) and not the formerly reported (11S,17S) diastereomer assigned by Wu et al.. Therefore, we propose that natural plakinidone is accurately represented by structure 12.

Entities:  

Year:  2016        PMID: 28190935      PMCID: PMC5295471          DOI: 10.1016/j.tetasy.2016.03.011

Source DB:  PubMed          Journal:  Tetrahedron Asymmetry        ISSN: 0957-4166


  27 in total

1.  Stereochemistry of the tadalafil diastereoisomers: a critical assessment of vibrational circular dichroism, electronic circular dichroism, and optical rotatory dispersion.

Authors:  Shi Qiu; Ewoud De Gussem; Kourosch Abbaspour Tehrani; Sergey Sergeyev; Patrick Bultinck; Wouter Herrebout
Journal:  J Med Chem       Date:  2013-11-05       Impact factor: 7.446

Review 2.  The online assignment of the absolute configuration of natural products: HPLC-CD in combination with quantum chemical CD calculations.

Authors:  Gerhard Bringmann; Tobias A M Gulder; Matthias Reichert; Tanja Gulder
Journal:  Chirality       Date:  2008-05-15       Impact factor: 2.437

3.  Structural reassignment of cytosporolides A-C via biomimetic synthetic studies and reinterpretation of NMR data.

Authors:  Justin T J Spence; Jonathan H George
Journal:  Org Lett       Date:  2011-09-02       Impact factor: 6.005

4.  Molecular structure determination using chiroptical spectroscopy: where we may go wrong?

Authors:  Prasad L Polavarapu
Journal:  Chirality       Date:  2012-04-29       Impact factor: 2.437

5.  A vibrational circular dichroism approach to the determination of the absolute configurations of flavorous 5-substituted-2(5H)-furanones.

Authors:  Atsufumi Nakahashi; Yoshihiro Yaguchi; Nobuaki Miura; Makoto Emura; Kenji Monde
Journal:  J Nat Prod       Date:  2011-03-07       Impact factor: 4.050

6.  Cytosporolides A-C, antimicrobial meroterpenoids with a unique peroxylactone skeleton from Cytospora sp.

Authors:  Yan Li; Subin Niu; Bingda Sun; Shuchun Liu; Xingzhong Liu; Yongsheng Che
Journal:  Org Lett       Date:  2010-07-16       Impact factor: 6.005

7.  Experimental and theoretical study of racemization, stability and tautomerism of vitamin C stereoisomers.

Authors:  Hossein A Dabbagh; Fatemeh Azami
Journal:  Food Chem       Date:  2014-05-17       Impact factor: 7.514

8.  Stereochemistry of the Brivaracetam Diastereoisomers.

Authors:  Shi Qiu; Kourosch Abbaspour Tehrani; Sergey Sergeyev; Patrick Bultinck; Wouter Herrebout; Benoit Mathieu
Journal:  Chirality       Date:  2016-01-06       Impact factor: 2.437

9.  A novel perlactone from the Caribbean sponge Plakortis angulospiculatus.

Authors:  D M Kushlan; D J Faulkner
Journal:  J Nat Prod       Date:  1991 Sep-Oct       Impact factor: 4.050

10.  Synthesis and Comprehensive Structural and Chiroptical Characterization of Enones Derived from (-)-α-Santonin by Experiment and Theory.

Authors:  Marek Masnyk; Aleksandra Butkiewicz; Marcin Górecki; Roman Luboradzki; Christoph Bannwarth; Stefan Grimme; Jadwiga Frelek
Journal:  J Org Chem       Date:  2016-05-12       Impact factor: 4.354

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  1 in total

Review 1.  Recent trends in the structural revision of natural products.

Authors:  Bhuwan Khatri Chhetri; Serge Lavoie; Anne Marie Sweeney-Jones; Julia Kubanek
Journal:  Nat Prod Rep       Date:  2018-06-20       Impact factor: 13.423

  1 in total

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