Rachel S Kelly1, Yamini Virkud2, Rachel Giorgio3, Juan C Celedón4, Scott T Weiss3, Jessica Lasky-Su3. 1. Channing Division of Network Medicine, Brigham and Women's Hospital Harvard Medical School, Boston, MA 02115, USA. Electronic address: hprke@channing.harvard.edu. 2. Division of Pediatric Allergy & Immunology, Massachusetts General Hospital for Children, Boston, MA 02114, USA. 3. Channing Division of Network Medicine, Brigham and Women's Hospital Harvard Medical School, Boston, MA 02115, USA. 4. Division of Pulmonary Medicine, Allergy and Immunology, Children's Hospital of Pittsburgh of the University of Pittsburgh Medical Center, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Abstract
BACKGROUND: The development of novel therapeutics and treatment regimens for the management of asthma is hindered by an incomplete understanding of its heterogeneous nature and pathophysiology. Metabolomics can provide an integrated and global profile of a biological system in a dysregulated state, making it a valuable tool to identify biomarkers along the disease development pathway and to understand the biological mechanisms driving that pathway. METHODS: Liquid chromatography-mass spectrometry metabolomic profiling was conducted on plasma samples provided at recruitment for 380 children with asthma from the 'Genetic Epidemiology of Asthma in Costa Rica Cohort'. Metabolites associated with three clinical characteristics of asthma severity (i) airway hyper-responsiveness (AHR) (ii) percent-predicted forced expiratory volume in one second/forced vital capacity ratio (FEV1/FVC), and (iii) FEV1/FVC post-bronchodilator were identified and their discriminatory ability assessed. Metabolite set enrichment analyses was applied to explore the biology underlying these relationships. RESULTS: AHR was associated (p<0.05) with 91 of 574 metabolites (15.9%), FEV1/FVC pre-bronchodilator with 102(17.8%), and FEV1/FVC post-bronchodilator with 155 (27.0%). The findings suggest that these characteristics capture some common and some distinct phenotypic aspects of lung function; glycerophospholipid, linoleic acid and pyrimidine metabolism were common to all three characteristics. The corresponding metabolomic profiles showed moderate but robust discriminatory ability. CONCLUSIONS: The results confirm the existence of an asthma severity metabolome. However, differences in the metabolomic profiles of the three lung function characteristics studied, suggest that refinement of both phenotype classification and metabolite selection should be a priority as the field of asthma metabolomics progresses.
BACKGROUND: The development of novel therapeutics and treatment regimens for the management of asthma is hindered by an incomplete understanding of its heterogeneous nature and pathophysiology. Metabolomics can provide an integrated and global profile of a biological system in a dysregulated state, making it a valuable tool to identify biomarkers along the disease development pathway and to understand the biological mechanisms driving that pathway. METHODS: Liquid chromatography-mass spectrometry metabolomic profiling was conducted on plasma samples provided at recruitment for 380 children with asthma from the 'Genetic Epidemiology of Asthma in Costa Rica Cohort'. Metabolites associated with three clinical characteristics of asthma severity (i) airway hyper-responsiveness (AHR) (ii) percent-predicted forced expiratory volume in one second/forced vital capacity ratio (FEV1/FVC), and (iii) FEV1/FVC post-bronchodilator were identified and their discriminatory ability assessed. Metabolite set enrichment analyses was applied to explore the biology underlying these relationships. RESULTS: AHR was associated (p<0.05) with 91 of 574 metabolites (15.9%), FEV1/FVC pre-bronchodilator with 102(17.8%), and FEV1/FVC post-bronchodilator with 155 (27.0%). The findings suggest that these characteristics capture some common and some distinct phenotypic aspects of lung function; glycerophospholipid, linoleic acid and pyrimidine metabolism were common to all three characteristics. The corresponding metabolomic profiles showed moderate but robust discriminatory ability. CONCLUSIONS: The results confirm the existence of an asthma severity metabolome. However, differences in the metabolomic profiles of the three lung function characteristics studied, suggest that refinement of both phenotype classification and metabolite selection should be a priority as the field of asthma metabolomics progresses.
Authors: Rodolfo P Vieira; Anna Cecília S Duarte; Renata C Claudino; Adenir Perini; Angela B G Santos; Henrique T Moriya; Fernanda M Arantes-Costa; Mílton A Martins; Celso R F Carvalho; Marisa Dolhnikoff Journal: Am J Respir Cell Mol Biol Date: 2007-07-19 Impact factor: 6.914
Authors: Michael J McGeachie; Amber Dahlin; Weiliang Qiu; Damien C Croteau-Chonka; Jessica Savage; Ann Chen Wu; Emily S Wan; Joanne E Sordillo; Amal Al-Garawi; Fernando D Martinez; Robert C Strunk; Robert F Lemanske; Andrew H Liu; Benjamin A Raby; Scott Weiss; Clary B Clish; Jessica A Lasky-Su Journal: Immun Inflamm Dis Date: 2015-05-07
Authors: Inês Laíns; Rachel S Kelly; John B Miller; Rufino Silva; Demetrios G Vavvas; Ivana K Kim; Joaquim N Murta; Jessica Lasky-Su; Joan W Miller; Deeba Husain Journal: Ophthalmology Date: 2017-09-12 Impact factor: 12.079
Authors: Rachel S Kelly; Kevin M Mendez; Mengna Huang; Brian D Hobbs; Clary B Clish; Robert Gerszten; Michael H Cho; Craig E Wheelock; Michael J McGeachie; Su H Chu; Juan C Celedón; Scott T Weiss; Jessica Lasky-Su Journal: Am J Respir Crit Care Med Date: 2022-02-01 Impact factor: 21.405
Authors: Priyadarshini Kachroo; Isobel D Stewart; Rachel S Kelly; Meryl Stav; Kevin Mendez; Amber Dahlin; Djøra I Soeteman; Su H Chu; Mengna Huang; Margaret Cote; Hanna M Knihtilä; Kathleen Lee-Sarwar; Michael McGeachie; Alberta Wang; Ann Chen Wu; Yamini Virkud; Pei Zhang; Nicholas J Wareham; Elizabeth W Karlson; Craig E Wheelock; Clary Clish; Scott T Weiss; Claudia Langenberg; Jessica A Lasky-Su Journal: Nat Med Date: 2022-03-21 Impact factor: 87.241
Authors: R S Kelly; J E Sordillo; J Lasky-Su; A Dahlin; W Perng; S L Rifas-Shiman; S T Weiss; D R Gold; A A Litonjua; M-F Hivert; E Oken; A C Wu Journal: Clin Exp Allergy Date: 2018-07-03 Impact factor: 5.018
Authors: Daniela Rago; Casper-Emil T Pedersen; Mengna Huang; Rachel S Kelly; Gözde Gürdeniz; Nicklas Brustad; Hanna Knihtilä; Kathleen A Lee-Sarwar; Andréanne Morin; Morten A Rasmussen; Jakob Stokholm; Klaus Bønnelykke; Augusto A Litonjua; Craig E Wheelock; Scott T Weiss; Jessica Lasky-Su; Hans Bisgaard; Bo L Chawes Journal: Am J Respir Crit Care Med Date: 2021-04-01 Impact factor: 21.405
Authors: Yura Lee; Han Chen; Wei Chen; Qibin Qi; Majid Afshar; Jianwen Cai; Martha L Daviglus; Bharat Thyagarajan; Kari E North; Stephanie J London; Eric Boerwinkle; Juan C Celedón; Robert C Kaplan; Bing Yu Journal: Metabolites Date: 2022-04-16
Authors: Stacey N Reinke; Shama Naz; Romanas Chaleckis; Hector Gallart-Ayala; Johan Kolmert; Nazanin Z Kermani; Angelica Tiotiu; David I Broadhurst; Anders Lundqvist; Henric Olsson; Marika Ström; Åsa M Wheelock; Cristina Gómez; Magnus Ericsson; Ana R Sousa; John H Riley; Stewart Bates; James Scholfield; Matthew Loza; Frédéric Baribaud; Per S Bakke; Massimo Caruso; Pascal Chanez; Stephen J Fowler; Thomas Geiser; Peter Howarth; Ildikó Horváth; Norbert Krug; Paolo Montuschi; Annelie Behndig; Florian Singer; Jacek Musial; Dominick E Shaw; Barbro Dahlén; Sile Hu; Jessica Lasky-Su; Peter J Sterk; Kian Fan Chung; Ratko Djukanovic; Sven-Erik Dahlén; Ian M Adcock; Craig E Wheelock Journal: Eur Respir J Date: 2022-06-30 Impact factor: 33.795
Authors: Rachel S Kelly; Bo L Chawes; Kevin Blighe; Yamini V Virkud; Damien C Croteau-Chonka; Michael J McGeachie; Clary B Clish; Kevin Bullock; Juan C Celedón; Scott T Weiss; Jessica A Lasky-Su Journal: Chest Date: 2018-06-13 Impact factor: 9.410
Authors: Rachel S Kelly; Joanne E Sordillo; Sharon M Lutz; Lydiana Avila; Manuel Soto-Quiros; Juan C Celedón; Michael J McGeachie; Amber Dahlin; Kelan Tantisira; Mengna Huang; Clary B Clish; Scott T Weiss; Jessica Lasky-Su; Ann Chen Wu Journal: Metabolites Date: 2019-09-07