Literature DB >> 27776981

Asthma Metabolomics and the Potential for Integrative Omics in Research and the Clinic.

Rachel S Kelly1, Amber Dahlin1, Michael J McGeachie1, Weiliang Qiu1, Joanne Sordillo2, Emily S Wan3, Ann Chen Wu2, Jessica Lasky-Su4.   

Abstract

Asthma is a complex disease well-suited to metabolomic profiling, both for the development of novel biomarkers and for the improved understanding of pathophysiology. In this review, we summarize the 21 existing metabolomic studies of asthma in humans, all of which reported significant findings and concluded that individual metabolites and metabolomic profiles measured in exhaled breath condensate, urine, plasma, and serum could identify people with asthma and asthma phenotypes with high discriminatory ability. There was considerable consistency across the studies in terms of the reported biomarkers, regardless of biospecimen, profiling technology, and population age. In particular, acetate, adenosine, alanine, hippurate, succinate, threonine, and trans-aconitate, and pathways relating to hypoxia response, oxidative stress, immunity, inflammation, lipid metabolism and the tricarboxylic acid cycle were all identified as significant in at least two studies. There were also a number of nonreplicated results; however, the literature is not yet sufficiently developed to determine whether these represent spurious findings or reflect the substantial heterogeneity and limited statistical power in the studies and their methods to date. This review highlights the need for additional asthma metabolomic studies to explore these issues, and, further, the need for standardized methods in the way these studies are conducted. We conclude by discussing the potential of translation of these metabolomic findings into clinically useful biomarkers and the crucial role that integrated omics is likely to play in this endeavor.
Copyright © 2016 American College of Chest Physicians. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  asthma; biomarkers; integrative omics; metabolomics; proteomics

Mesh:

Substances:

Year:  2016        PMID: 27776981      PMCID: PMC5310123          DOI: 10.1016/j.chest.2016.10.008

Source DB:  PubMed          Journal:  Chest        ISSN: 0012-3692            Impact factor:   9.410


  39 in total

Review 1.  Global strategies to integrate the proteome and metabolome.

Authors:  Alan Saghatelian; Benjamin F Cravatt
Journal:  Curr Opin Chem Biol       Date:  2005-02       Impact factor: 8.822

2.  Breath metabolomic profiling by nuclear magnetic resonance spectroscopy in asthma.

Authors:  B Ibrahim; P Marsden; J A Smith; A Custovic; M Nilsson; S J Fowler
Journal:  Allergy       Date:  2013-07-29       Impact factor: 13.146

Review 3.  Nuclear magnetic resonance spectroscopy.

Authors:  I C Smith; D E Blandford
Journal:  Anal Chem       Date:  1995-06-15       Impact factor: 6.986

4.  Proteomics of exhaled breath condensate: a realistic approach in children with asthma?

Authors:  E Dompeling; Q Jöbsis
Journal:  Clin Exp Allergy       Date:  2011-03       Impact factor: 5.018

5.  Metabolomic Endotype of Asthma.

Authors:  Suzy A A Comhair; Jonathan McDunn; Carole Bennett; Jade Fettig; Serpil C Erzurum; Satish C Kalhan
Journal:  J Immunol       Date:  2015-06-05       Impact factor: 5.422

Review 6.  Adult-onset asthma: is it really different?

Authors:  Selma B de Nijs; Lisette N Venekamp; Elisabeth H Bel
Journal:  Eur Respir Rev       Date:  2013-03-01

7.  Metabolomics pilot study to identify volatile organic compound markers of childhood asthma in exhaled breath.

Authors:  Florian Gahleitner; Cristina Guallar-Hoyas; Caroline S Beardsmore; Hitesh C Pandya; Cl Paul Thomas
Journal:  Bioanalysis       Date:  2013-09       Impact factor: 2.681

8.  Asthma severity in childhood and metabolomic profiling of breath condensate.

Authors:  S Carraro; G Giordano; F Reniero; D Carpi; M Stocchero; P J Sterk; E Baraldi
Journal:  Allergy       Date:  2012-11-16       Impact factor: 13.146

Review 9.  Personalized Medicine in Respiratory Disease: Role of Proteomics.

Authors:  V S Priyadharshini; Luis M Teran
Journal:  Adv Protein Chem Struct Biol       Date:  2015-12-31       Impact factor: 3.507

10.  The metabolomics of asthma control: a promising link between genetics and disease.

Authors:  Michael J McGeachie; Amber Dahlin; Weiliang Qiu; Damien C Croteau-Chonka; Jessica Savage; Ann Chen Wu; Emily S Wan; Joanne E Sordillo; Amal Al-Garawi; Fernando D Martinez; Robert C Strunk; Robert F Lemanske; Andrew H Liu; Benjamin A Raby; Scott Weiss; Clary B Clish; Jessica A Lasky-Su
Journal:  Immun Inflamm Dis       Date:  2015-05-07
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  60 in total

1.  Circulating Plasma Metabolites and Cognitive Function in a Puerto Rican Cohort.

Authors:  Natalia Palacios; Jong Soo Lee; Tammy Scott; Rachel S Kelly; Shilpa N Bhupathiraju; Sherman J Bigornia; Katherine L Tucker
Journal:  J Alzheimers Dis       Date:  2020       Impact factor: 4.472

2.  Circulating 25-hydroxyvitamin D, nasopharyngeal airway metabolome, and bronchiolitis severity.

Authors:  K Hasegawa; C J Stewart; J C Celedón; J M Mansbach; C Tierney; C A Camargo
Journal:  Allergy       Date:  2018-02-05       Impact factor: 13.146

3.  Serum Metabolome Is Associated With the Nasopharyngeal Microbiota and Disease Severity Among Infants With Bronchiolitis.

Authors:  Christopher J Stewart; Jonathan M Mansbach; Nadim J Ajami; Joseph F Petrosino; Zhaozhong Zhu; Liming Liang; Carlos A Camargo; Kohei Hasegawa
Journal:  J Infect Dis       Date:  2019-05-24       Impact factor: 5.226

Review 4.  Targeted Therapy for Severe Asthma: Identifying the Right Patients.

Authors:  Kathy Low; Philip G Bardin
Journal:  Mol Diagn Ther       Date:  2017-06       Impact factor: 4.074

5.  Metabolomic profiling of lung function in Costa-Rican children with asthma.

Authors:  Rachel S Kelly; Yamini Virkud; Rachel Giorgio; Juan C Celedón; Scott T Weiss; Jessica Lasky-Su
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2017-02-07       Impact factor: 5.187

6.  Serum 25-hydroxyvitamin D, metabolome, and bronchiolitis severity among infants-A multicenter cohort study.

Authors:  Kohei Hasegawa; Christopher J Stewart; Juan C Celedón; Jonathan M Mansbach; Courtney Tierney; Carlos A Camargo
Journal:  Pediatr Allergy Immunol       Date:  2018-04-15       Impact factor: 6.377

7.  Response.

Authors:  Rachel S Kelly; Jessica Lasky-Su
Journal:  Chest       Date:  2018-05       Impact factor: 9.410

8.  Associations of Nasopharyngeal Metabolome and Microbiome with Severity among Infants with Bronchiolitis. A Multiomic Analysis.

Authors:  Christopher J Stewart; Jonathan M Mansbach; Matthew C Wong; Nadim J Ajami; Joseph F Petrosino; Carlos A Camargo; Kohei Hasegawa
Journal:  Am J Respir Crit Care Med       Date:  2017-10-01       Impact factor: 21.405

9.  Vitamin D prenatal programming of childhood metabolomics profiles at age 3 y.

Authors:  Kevin Blighe; Bo L Chawes; Rachel S Kelly; Hooman Mirzakhani; Michael McGeachie; Augusto A Litonjua; Scott T Weiss; Jessica A Lasky-Su
Journal:  Am J Clin Nutr       Date:  2017-08-23       Impact factor: 7.045

10.  Metabolomics in the prevention and management of asthma.

Authors:  Zhaozhong Zhu; Carlos A Camargo; Kohei Hasegawa
Journal:  Expert Rev Respir Med       Date:  2019-10-09       Impact factor: 3.772

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