Literature DB >> 28181027

Track-weighted imaging methods: extracting information from a streamlines tractogram.

Fernando Calamante1,2,3.   

Abstract

A whole-brain streamlines data-set (so-called tractogram) generated from diffusion MRI provides a wealth of information regarding structural connectivity in the brain. Besides visualisation strategies, a number of post-processing approaches have been proposed to extract more detailed information from the tractogram. One such approach is based on exploiting the information contained in the tractogram to generate track-weighted (TW) images. In the track-weighted imaging (TWI) approach, a very large number of streamlines are often generated throughout the brain, and an image is then computed based on properties of the streamlines themselves (e.g. based on the number of streamlines in each voxel, or their average length), or based on the values of an associated image (e.g. a diffusion anisotropy map, a T2 map) measured at the coordinates of the streamlines. This review article describes various approaches used to generate TW images and discusses the flexible formalism that TWI provides to generate a range of images with very different contrast, as well as the super-resolution properties of the resulting images. It also explains how this approach provides a powerful means to study structural and functional connectivity simultaneously. Finally, a number of key issues for its practical implementation are discussed.

Keywords:  Connectivity; Fibre-tracking; Super-resolution; Tractogram; Tractography

Mesh:

Year:  2017        PMID: 28181027     DOI: 10.1007/s10334-017-0608-1

Source DB:  PubMed          Journal:  MAGMA        ISSN: 0968-5243            Impact factor:   2.310


  79 in total

1.  PASTA: pointwise assessment of streamline tractography attributes.

Authors:  Derek K Jones; Adam R Travis; Greg Eden; Carlo Pierpaoli; Peter J Basser
Journal:  Magn Reson Med       Date:  2005-06       Impact factor: 4.668

2.  The effects of SIFT on the reproducibility and biological accuracy of the structural connectome.

Authors:  Robert E Smith; Jacques-Donald Tournier; Fernando Calamante; Alan Connelly
Journal:  Neuroimage       Date:  2014-10-12       Impact factor: 6.556

3.  SIFT: Spherical-deconvolution informed filtering of tractograms.

Authors:  Robert E Smith; Jacques-Donald Tournier; Fernando Calamante; Alan Connelly
Journal:  Neuroimage       Date:  2012-12-11       Impact factor: 6.556

4.  Structural white-matter connections mediating distinct behavioral components of spatial neglect in right brain-damaged patients.

Authors:  Maarten J Vaessen; Arnaud Saj; Karl-Olof Lovblad; Markus Gschwind; Patrik Vuilleumier
Journal:  Cortex       Date:  2016-01-19       Impact factor: 4.027

5.  Super-Resolution Track Density Imaging: Anatomic Detail versus Quantification.

Authors:  F Calamante
Journal:  AJNR Am J Neuroradiol       Date:  2016-02-25       Impact factor: 3.825

6.  The average pathlength map: a diffusion MRI tractography-derived index for studying brain pathology.

Authors:  Kerstin Pannek; Jane L Mathias; Erin D Bigler; Greg Brown; Jamie D Taylor; Stephen E Rose
Journal:  Neuroimage       Date:  2010-12-13       Impact factor: 6.556

7.  Quantitative tractography metrics of white matter integrity in diffusion-tensor MRI.

Authors:  Stephen Correia; Stephanie Y Lee; Thom Voorn; David F Tate; Robert H Paul; Song Zhang; Stephen P Salloway; Paul F Malloy; David H Laidlaw
Journal:  Neuroimage       Date:  2008-05-24       Impact factor: 6.556

8.  Tract profiles of white matter properties: automating fiber-tract quantification.

Authors:  Jason D Yeatman; Robert F Dougherty; Nathaniel J Myall; Brian A Wandell; Heidi M Feldman
Journal:  PLoS One       Date:  2012-11-14       Impact factor: 3.240

9.  Tract specific reproducibility of tractography based morphology and diffusion metrics.

Authors:  René M H Besseling; Jacobus F A Jansen; Geke M Overvliet; Maarten J Vaessen; Hilde M H Braakman; Paul A M Hofman; Albert P Aldenkamp; Walter H Backes
Journal:  PLoS One       Date:  2012-04-02       Impact factor: 3.240

10.  Mapping track density changes in nigrostriatal and extranigral pathways in Parkinson's disease.

Authors:  Erik Ziegler; Maud Rouillard; Elodie André; Tim Coolen; Johan Stender; Evelyne Balteau; Christophe Phillips; Gaëtan Garraux
Journal:  Neuroimage       Date:  2014-06-20       Impact factor: 6.556

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  13 in total

1.  Track density imaging in progressive supranuclear palsy: A pilot study.

Authors:  Salvatore Nigro; Maria Giovanna Bianco; Gennarina Arabia; Maurizio Morelli; Rita Nisticò; Fabiana Novellino; Maria Salsone; Antonio Augimeri; Aldo Quattrone
Journal:  Hum Brain Mapp       Date:  2018-11-26       Impact factor: 5.038

2.  Associations Between White Matter Microstructures and Cognitive Functioning in 8-Year-Old Children: A Track-Weighted Imaging Study.

Authors:  Rajikha Raja; Xiaoxu Na; Alexandra Moore; Raymond Otoo; Charles M Glasier; Thomas M Badger; Xiawei Ou
Journal:  J Child Neurol       Date:  2022-03-07       Impact factor: 2.363

3.  Super-Resolution Track-Density Imaging Reveals Fine Anatomical Features in Tree Shrew Primary Visual Cortex and Hippocampus.

Authors:  Jian-Kun Dai; Shu-Xia Wang; Dai Shan; Hai-Chen Niu; Hao Lei
Journal:  Neurosci Bull       Date:  2017-12-16       Impact factor: 5.203

4.  Facial nerve tractography: A new tool for the detection of perineural spread in parotid cancers.

Authors:  René-Charles Rouchy; Arnaud Attyé; Maud Medici; Félix Renard; Adrian Kastler; Sylvie Grand; Irène Tropres; Christian Adrien Righini; Alexandre Krainik
Journal:  Eur Radiol       Date:  2018-04-09       Impact factor: 5.315

5.  Neural correlates of sleep quality in children: Sex-specific associations shown by brain diffusion tractography.

Authors:  Rajikha Raja; Xiaoxu Na; Thomas M Badger; Xiawei Ou
Journal:  J Neuroimaging       Date:  2022-01-18       Impact factor: 2.324

6.  Default Mode Network structural alterations in Kocher-Monro trajectory white matter transection: A 3 and 7 tesla simulation modeling approach.

Authors:  Saül Pascual-Diaz; Jose Pineda; Laura Serra; Federico Varriano; Alberto Prats-Galino
Journal:  PLoS One       Date:  2019-11-07       Impact factor: 3.240

7.  SPECTRE-A novel dMRI visualization technique for the display of cerebral connectivity.

Authors:  Marco Reisert; Christoph P Kaller; Marvin Reuter; Horst Urbach; Bastian E Sajonz; Peter C Reinacher; Volker A Coenen
Journal:  Hum Brain Mapp       Date:  2021-02-27       Impact factor: 5.038

8.  A diffusion tensor-based method facilitating volumetric assessment of fiber orientations in skeletal muscle.

Authors:  Laura Secondulfo; Melissa T Hooijmans; Joep J Suskens; Valentina Mazzoli; Mario Maas; Johannes L Tol; Aart J Nederveen; Gustav J Strijkers
Journal:  PLoS One       Date:  2022-01-27       Impact factor: 3.240

9.  Application of Graph Theory to Assess Static and Dynamic Brain Connectivity: Approaches for Building Brain Graphs.

Authors:  Qingbao Yu; Yuhui Du; Jiayu Chen; Jing Sui; Tulay Adali; Godfrey Pearlson; Vince D Calhoun
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2018-04-25       Impact factor: 10.961

Review 10.  The Seven Deadly Sins of Measuring Brain Structural Connectivity Using Diffusion MRI Streamlines Fibre-Tracking.

Authors:  Fernando Calamante
Journal:  Diagnostics (Basel)       Date:  2019-09-06
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