Literature DB >> 28181015

A density functional theory investigation of the interaction of the tetraaqua calcium cation with bidentate carbonyl ligands.

Daniel Garcez S Quattrociocchi1, Marcos Vinicius Monsores Meuser2, Glaucio Braga Ferreira1,3, José Walkimar de M Carneiro1,3, Stanislav R Stoyanov4,5, Leonardo Moreira da Costa6,7,8.   

Abstract

Calcium complexes with bidentate carbonyl ligands are important in biological systems, medicine and industry, where the concentration of Ca2+ is controlled using chelating ligands. The exchange of two water molecules of [Ca(H2O)6]2+ for one bidentate monosubstituted and homo disubstituted dicarbonyl ligand was investigated using the B3LYP/6-311++G(d,p) method. The ligand substituents NH2, OCH3, OH, CH3, H, F, Cl, CN and NO2 are functional groups with distinct electron-donating and -withdrawing effects that bond directly to the sp2 C atom of the carbonyl group. The geometry, charge and energy characteristics of the complexes were analyzed to help understand the effects of substituents, spacer length and chelation. Coordination strength was quantified in terms of the enthalpy and free energy of the exchange reaction. The most negative enthalpies were calculated for the coordination of bidentate ligands containing three to five methylene group spacers between carbonyls. The chelate effect contribution was analyzed based on the thermochemistry. The electronic character of the substituent modulates the strength of binding to the metal cation, as ligands containing electron-donor substituents coordinate stronger than those with electron-acceptor substituents. This is reflected in the geometric (bond length and chelating angle), electronic (atomic charges) and energetic (components of the total interacting energy) characteristics of the complexes. Energy decomposition analysis (EDA)-an approach for partitioning of the energy into its chemical origins-shows that the electrostatic component of the coordination is predominant, and yields relevant contribution of the covalent term, especially for the electron-withdrawing substituted ligands. The chelate effect of the bidentate ligands was noticeable when compared with substitution by two monodentate ligands. Graphical abstract The affinity of 18 bidentate carbonyl ligands toward the [Ca(H2O)4]2+ cation is evaluated in terms of energetic, geometric and electronic parameters of the isolated ligands and the substituted aqua complexes. The electronic effects-inductive and mesomeric-intrinsic to the molecular structure of each ligand are found to modulate the strength of the metal-ligand interaction. The effects of polysubstitution, chelation and the length of the alkyl spacers between the anchor points of the ligand are also analyzed.

Entities:  

Keywords:  Bidentate carbonyl ligands; Ca2+ cation; Chelate effect; Density functional theory (DFT); Energy decomposition analysis; Inorganic scaling; Ionophore

Year:  2017        PMID: 28181015     DOI: 10.1007/s00894-017-3240-0

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  29 in total

1.  Noncovalent metal-ligand bond energies as studied by threshold collision-induced dissociation

Authors: 
Journal:  Mass Spectrom Rev       Date:  2000-07       Impact factor: 10.946

2.  Charged solvatochromic dyes as signal transducers in pH independent fluorescent and colorimetric ion selective nanosensors.

Authors:  Xiaojiang Xie; Agustín Gutiérrez; Valentin Trofimov; Istvan Szilagyi; Thierry Soldati; Eric Bakker
Journal:  Anal Chem       Date:  2015-10-06       Impact factor: 6.986

Review 3.  Rho-Rho-kinase pathway in smooth muscle contraction and cytoskeletal reorganization of non-muscle cells.

Authors:  Y Fukata; M Amano; K Kaibuchi
Journal:  Trends Pharmacol Sci       Date:  2001-01       Impact factor: 14.819

4.  A simple model for metal cation-phosphate interactions in nucleic acids in the gas phase: alkali metal cations and trimethyl phosphate.

Authors:  Chunhai Ruan; Hai Huang; M T Rodgers
Journal:  J Am Soc Mass Spectrom       Date:  2008-02       Impact factor: 3.109

5.  Interaction between alkaline earth cations and oxo-ligands. DFT study of the affinity of the Ca2+ cation for carbonyl ligands.

Authors:  Leonardo Moreira da Costa; José Walkimar de Mesquita Carneiro; Gilberto Alves Romeiro; Lilian Weitzel Coelho Paes
Journal:  J Mol Model       Date:  2010-04-30       Impact factor: 1.810

6.  Modeling metal cation-phosphate interactions in nucleic acids: activated dissociation of Mg+, Al+, Cu+, and Zn+ complexes of triethyl phosphate.

Authors:  Chunhai Ruan; M T Rodgers
Journal:  J Am Chem Soc       Date:  2009-08-12       Impact factor: 15.419

7.  Interaction of Ca2+ with uracil and its thio derivatives in the gas phase.

Authors:  Cristina Trujillo; Al Mokhtar Lamsabhi; Otilia Mó; Manuel Yáñez; Jean-Yves Salpin
Journal:  Org Biomol Chem       Date:  2008-08-08       Impact factor: 3.876

8.  Optimizing calcium selective fluorimetric nanospheres.

Authors:  Anna Kisiel; Katarzyna Kłucińska; Marianna Gniadek; Krzysztof Maksymiuk; Agata Michalska
Journal:  Talanta       Date:  2015-06-23       Impact factor: 6.057

Review 9.  The importance of Ca(2+)-dependent mechanisms for the initiation of the heartbeat.

Authors:  Rebecca A Capel; Derek A Terrar
Journal:  Front Physiol       Date:  2015-03-25       Impact factor: 4.566

10.  High Resolution Prediction of Calcium-Binding Sites in 3D Protein Structures Using FEATURE.

Authors:  Weizhuang Zhou; Grace W Tang; Russ B Altman
Journal:  J Chem Inf Model       Date:  2015-08-10       Impact factor: 4.956

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  1 in total

1.  A DFT study of the interaction between [Cd(H2O)3]2+ and monodentate O-, N-, and S-donor ligands: bond interaction analysis.

Authors:  Victor Hugo Malamace da Silva; Daniel Garcez S Quattrociocchi; Stanislav R Stoyanov; José Walkimar de Mesquita Carneiro; Leonardo Moreira da Costa; Glaucio Braga Ferreira
Journal:  J Mol Model       Date:  2018-01-08       Impact factor: 1.810

  1 in total

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