Literature DB >> 29313121

A DFT study of the interaction between [Cd(H2O)3]2+ and monodentate O-, N-, and S-donor ligands: bond interaction analysis.

Victor Hugo Malamace da Silva1, Daniel Garcez S Quattrociocchi2, Stanislav R Stoyanov3,4, José Walkimar de Mesquita Carneiro2, Leonardo Moreira da Costa5, Glaucio Braga Ferreira6.   

Abstract

A series of B3LYP/6-311+G(d,p) calculations of the affinity of monodentate ligands for [Cd(H2O)3]2+ are performed. Three types of ligands containing O (phosphine oxide, lactam, amide, carboxylic acid, ester, ketone, aldehyde, ether, halohydrin, enol, furan), N (thiocyanate, amine, ammonia, azide), and S (thioester, thioketone, thiol, thiophene, disulfide) interacting atoms are investigated. The results show that phosphine oxide has the largest affinity for the cadmium cation due to the polarization of the P=O bond. As the P atom has a large atomic radius, the O atom can polarize the electronic cloud enhancing its amount of electronic charge and favoring the interaction with Cd2+. The affinity order found is phosphine oxide > thioester > lactam > amide > carboxylic acid > ester > thioketone > ketone > thiocyanate > amine > ammonia > aldehyde > ether > thiol > thiophene > enol > halohydrin > disulfide > azide > furan ligands. These results were also corroborated by the functional M06-2X. The electronic effects (resonance and induction) of neighboring groups of the interacting atom modulate the strength of metal-ligand binding. For almost all the O-donor ligands the electrostatic component has the same magnitude as the covalent term, while for the N- and S-donor ligands the covalent term is predominant. The polarization term accounts for twice the exchange term as part of the covalent component. The dispersion term varies less than 2 kcal mol-1 for the complexes analyzed. The Pauli repulsion term is correlated with the metal ligand distance, increasing in the compounds with decreased metal-ligand bond length. The charge between the interacting atoms is also strongly correlated with both the interacting strength and the electrostatic interaction component. The natural bond orbital analysis highlights correlations of the bond order, and S and P contributions of the interacting metal-ligand orbital with the coordination strength. Graphical abstract The affinity of 20 monodentate ligands with different functional groups for the [Cd(H2O)3]2+ cation is calculated based on the interaction enthalpy and Gibbs free energy for the substitution of one water molecule from the fully hydrated cation. The affinity is correlated with geometric, electronic, and energetic parameters of the ligands and the complexes as well as with energy decomposition and natural bond order analyses results.

Entities:  

Keywords:  Density functional theory (DFT); Energy decomposition analysis (EDA); Interaction strength; Natural bond orbital (NBO) analysis; O- and N- and S-donor ligands; [Cd(H2O)3]2+ cation

Year:  2018        PMID: 29313121     DOI: 10.1007/s00894-017-3571-x

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  24 in total

1.  Interactions between precipitation and Scots pine canopies along a heavy-metal pollution gradient.

Authors:  T M Nieminen; J Derome; H S Helmisaari
Journal:  Environ Pollut       Date:  1999-07       Impact factor: 8.071

2.  Factors governing the metal coordination number in metal complexes from Cambridge Structural Database analyses.

Authors:  Minko Dudev; Jonathan Wang; Todor Dudev; Carmay Lim
Journal:  J Phys Chem B       Date:  2006-02-02       Impact factor: 2.991

3.  Acids and bases.

Authors:  R G Pearson
Journal:  Science       Date:  1966-01-14       Impact factor: 47.728

4.  Effect of Substituents on the Bond Strength of Air-Stable Dicyanomethyl Radical Thermochromes.

Authors:  Joshua P Peterson; Margarita R Geraskina; Rui Zhang; Arthur H Winter
Journal:  J Org Chem       Date:  2017-06-06       Impact factor: 4.354

5.  Substituent Effects on the Absorption and Fluorescence Properties of Anthracene.

Authors:  Salsabil Abou-Hatab; Vincent A Spata; Spiridoula Matsika
Journal:  J Phys Chem A       Date:  2017-02-01       Impact factor: 2.781

6.  Interactions between alkaline earth cations and oxo ligands. DFT study of the affinity of the Mg²+ cation for phosphoryl ligands.

Authors:  Leonardo Moreira da Costa; José Walkimar de Mesquita Carneiro; Lilian Weitzel Coelho Paes
Journal:  J Mol Model       Date:  2010-12-14       Impact factor: 1.810

7.  Short-term, low-dose cadmium exposure induces hyperpermeability in human renal glomerular endothelial cells.

Authors:  Liqun Li; Fengyun Dong; Dongmei Xu; Linna Du; Suhua Yan; Hesheng Hu; Corrinne G Lobe; Fan Yi; Carolyn M Kapron; Ju Liu
Journal:  J Appl Toxicol       Date:  2015-05-25       Impact factor: 3.446

8.  Interaction of d(10) metal ions with thioether ligands: a thermodynamic and theoretical study.

Authors:  Andrea Melchior; Elena Peralta; Manuel Valiente; Claudio Tavagnacco; Francesco Endrizzi; Marilena Tolazzi
Journal:  Dalton Trans       Date:  2013-02-11       Impact factor: 4.390

9.  Mobilization and removing of cadmium from kidney by GMDTC utilizing renal glucose reabsorption pathway.

Authors:  Xiaojiang Tang; Jinqiu Zhu; Zhiyong Zhong; Minhui Luo; Guangxian Li; Zhihong Gong; Chenzi Zhang; Fan Fei; Xiaolin Ruan; Jinlin Zhou; Gaofeng Liu; Guoding Li; James Olson; Xuefeng Ren
Journal:  Toxicol Appl Pharmacol       Date:  2016-06-06       Impact factor: 4.219

10.  Interaction between alkaline earth cations and oxo ligands: a DFT study of the affinity of Mg2+ for carbonyl ligands.

Authors:  Leonardo Moreira da Costa; Stanislav R Stoyanov; José Walkimar de M Carneiro
Journal:  J Mol Model       Date:  2012-05-16       Impact factor: 1.810

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