Literature DB >> 28180025

Constitutional Epi/Genetic Conditions: Genetic, Epigenetic, and Environmental Factors.

Laila C Schenkel1, David Rodenhiser2, Victoria Siu3, Elizabeth McCready4, Peter Ainsworth5, Bekim Sadikovic6.   

Abstract

There are more than 4,000 phenotypes for which the molecular basis is at least partly known. Though defects in primary DNA structure constitute a major cause of these disorders, epigenetic disruption is emerging as an important alternative mechanism in the etiology of a broad range of congenital and developmental conditions. These include epigenetic defects caused by either localized (in cis) genetic alterations or more distant (in trans) genetic events but can also include environmental effects. Emerging evidence suggests interplay between genetic and environmental factors in the epigenetic etiology of several constitutional "epi/genetic" conditions. This review summarizes our broadening understanding of how epigenetics contributes to pediatric disease by exploring different classes of epigenomic disorders. It further challenges the simplistic dogma of "DNA encodes RNA encodes protein" to best understand the spectrum of factors that can influence genetic traits in a pediatric population.

Keywords:  DNA methylation; environmental exposures; epigenetics; genetic syndromes; imprinting; pediatric diseases

Year:  2016        PMID: 28180025      PMCID: PMC5288004          DOI: 10.1055/s-0036-1593849

Source DB:  PubMed          Journal:  J Pediatr Genet        ISSN: 2146-460X


  136 in total

1.  Discordance between genetic and epigenetic defects in pseudohypoparathyroidism type 1b revealed by inconsistent loss of maternal imprinting at GNAS1.

Authors:  Suzanne Jan de Beur; Changlin Ding; Emily Germain-Lee; Justin Cho; Alexander Maret; Michael A Levine
Journal:  Am J Hum Genet       Date:  2003-07-11       Impact factor: 11.025

2.  DNA methylation of IGF2, GNASAS, INSIGF and LEP and being born small for gestational age.

Authors:  Elmar W Tobi; Bastiaan T Heijmans; Dennis Kremer; Hein Putter; Henriette A Delemarre-van de Waal; Martijn J J Finken; Jan M Wit; P Eline Slagboom
Journal:  Epigenetics       Date:  2011-02-01       Impact factor: 4.528

Review 3.  Nutritional epigenomics of metabolic syndrome: new perspective against the epidemic.

Authors:  Catherine Gallou-Kabani; Claudine Junien
Journal:  Diabetes       Date:  2005-07       Impact factor: 9.461

Review 4.  Interplay between DNA methylation, histone modification and chromatin remodeling in stem cells and during development.

Authors:  Kohta Ikegami; Jun Ohgane; Satoshi Tanaka; Shintaro Yagi; Kunio Shiota
Journal:  Int J Dev Biol       Date:  2009       Impact factor: 2.203

5.  Mutations in the chromatin-associated protein ATRX.

Authors:  Richard J Gibbons; Takahito Wada; Christopher A Fisher; Nicola Malik; Matthew J Mitson; David P Steensma; Alan Fryer; David R Goudie; Ian D Krantz; Joanne Traeger-Synodinos
Journal:  Hum Mutat       Date:  2008-06       Impact factor: 4.878

6.  Epigenetic alteration of microRNAs in DNMT3B-mutated patients of ICF syndrome.

Authors:  Sole Gatto; Floriana Della Ragione; Amelia Cimmino; Maria Strazzullo; Muller Fabbri; Margherita Mutarelli; Lorenzo Ferraro; Alessandro Weisz; Maurizio D'Esposito; Maria R Matarazzo
Journal:  Epigenetics       Date:  2010-07-01       Impact factor: 4.528

7.  Clinical and molecular genetic features of Beckwith-Wiedemann syndrome associated with assisted reproductive technologies.

Authors:  Derek Lim; Sarah C Bowdin; Louise Tee; Gail A Kirby; Edward Blair; Alan Fryer; Wayne Lam; Christine Oley; Trevor Cole; Louise A Brueton; Wolf Reik; Fiona Macdonald; Eamonn R Maher
Journal:  Hum Reprod       Date:  2008-12-10       Impact factor: 6.918

8.  Inter- and intra-individual variation in allele-specific DNA methylation and gene expression in children conceived using assisted reproductive technology.

Authors:  Nahid Turan; Sunita Katari; Leigh F Gerson; Raffi Chalian; Michael W Foster; John P Gaughan; Christos Coutifaris; Carmen Sapienza
Journal:  PLoS Genet       Date:  2010-07-22       Impact factor: 5.917

9.  Individual epigenetic status of the pathogenic D4Z4 macrosatellite correlates with disease in facioscapulohumeral muscular dystrophy.

Authors:  Takako I Jones; Oliver D King; Charis L Himeda; Sachiko Homma; Jennifer C J Chen; Mary Lou Beermann; Chi Yan; Charles P Emerson; Jeffrey B Miller; Kathryn R Wagner; Peter L Jones
Journal:  Clin Epigenetics       Date:  2015-03-29       Impact factor: 6.551

10.  The interaction of genetic variants and DNA methylation of the interleukin-4 receptor gene increase the risk of asthma at age 18 years.

Authors:  Nelís Soto-Ramírez; Syed Hasan Arshad; John W Holloway; Hongmei Zhang; Eric Schauberger; Susan Ewart; Veeresh Patil; Wilfried Karmaus
Journal:  Clin Epigenetics       Date:  2013-01-03       Impact factor: 6.551

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  7 in total

1.  Advances in Pediatric Genetic Testing.

Authors:  Elizabeth McCready
Journal:  J Pediatr Genet       Date:  2017-03

2.  The defining DNA methylation signature of Kabuki syndrome enables functional assessment of genetic variants of unknown clinical significance.

Authors:  Erfan Aref-Eshghi; Laila C Schenkel; Hanxin Lin; Cindy Skinner; Peter Ainsworth; Guillaume Paré; David Rodenhiser; Charles Schwartz; Bekim Sadikovic
Journal:  Epigenetics       Date:  2017-11-07       Impact factor: 4.528

3.  Hypermethylation of NRG1 gene correlates with the presence of heart defects in Down's syndrome.

Authors:  Artur Dobosz; Agnieszka Grabowska; Miroslaw Bik-Multanowski
Journal:  J Genet       Date:  2019-12       Impact factor: 1.166

4.  DNA methylation epi-signature is associated with two molecularly and phenotypically distinct clinical subtypes of Phelan-McDermid syndrome.

Authors:  L C Schenkel; E Aref-Eshghi; K Rooney; J Kerkhof; M A Levy; H McConkey; R C Rogers; K Phelan; S M Sarasua; L Jain; R Pauly; L Boccuto; B DuPont; G Cappuccio; N Brunetti-Pierri; C E Schwartz; B Sadikovic
Journal:  Clin Epigenetics       Date:  2021-01-06       Impact factor: 6.551

Review 5.  Diagnostic Utility of Genome-Wide DNA Methylation Analysis in Mendelian Neurodevelopmental Disorders.

Authors:  Sadegheh Haghshenas; Pratibha Bhai; Erfan Aref-Eshghi; Bekim Sadikovic
Journal:  Int J Mol Sci       Date:  2020-12-06       Impact factor: 5.923

6.  Peripheral blood epi-signature of Claes-Jensen syndrome enables sensitive and specific identification of patients and healthy carriers with pathogenic mutations in KDM5C.

Authors:  Laila C Schenkel; Erfan Aref-Eshghi; Cindy Skinner; Peter Ainsworth; Hanxin Lin; Guillaume Paré; David I Rodenhiser; Charles Schwartz; Bekim Sadikovic
Journal:  Clin Epigenetics       Date:  2018-02-14       Impact factor: 6.551

7.  Dissecting the Epigenetic Changes Induced by Non-Antipsychotic Mood Stabilizers on Schizophrenia and Affective Disorders: A Systematic Review.

Authors:  Manuel Gardea-Resendez; Mehmet Utku Kucuker; Caren J Blacker; Ada M-C Ho; Paul E Croarkin; Mark A Frye; Marin Veldic
Journal:  Front Pharmacol       Date:  2020-04-22       Impact factor: 5.810

  7 in total

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