Literature DB >> 20930547

DNA methylation of IGF2, GNASAS, INSIGF and LEP and being born small for gestational age.

Elmar W Tobi1, Bastiaan T Heijmans, Dennis Kremer, Hein Putter, Henriette A Delemarre-van de Waal, Martijn J J Finken, Jan M Wit, P Eline Slagboom.   

Abstract

Being born small for gestational age (SGA), a proxy for intrauterine growth restriction (IUGR), and prenatal famine exposure are both associated with a greater risk of metabolic disease. Both associations have been hypothesized to involve epigenetic mechanisms. We investigated whether prenatal growth restriction early in pregnancy was associated with changes in DNA methylation at loci that were previously shown to be sensitive to early gestational famine exposure. We compared 38 individuals born preterm (< 32 weeks) and with a birth weight too low for their gestational age (-1SDS) and a normal postnatal growth (>-1SDS at 3 months post term; AGA). The SGA individuals were not only lighter at birth, but also had a smaller length (P=3.3x10 (-13) ) and head circumference at birth (P=4.1x10 (-13) ). The DNA methylation levels of IGF2, GNASAS, INSIGF and LEP were 48.5%, 47.5%, 79.4% and 25.7% respectively. This was not significantly different between SGA and AGA individuals. Risk factors for being born SGA, including preeclampsia and maternal smoking, were also not associated with DNA methylation at these loci. Growth restriction early in development is not associated with DNA methylation at loci shown to be affected by prenatal famine exposure. Our and previous results by others indicate that prenatal growth restriction and famine exposure may be associated with different epigenetic changes or non epigenetic mechanisms that may lead to similar later health outcomes.

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Year:  2011        PMID: 20930547      PMCID: PMC3278785          DOI: 10.4161/epi.6.2.13516

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  51 in total

1.  DNA methylation, insulin resistance, and blood pressure in offspring determined by maternal periconceptional B vitamin and methionine status.

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Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-27       Impact factor: 11.205

Review 2.  Adult sequelae of intrauterine growth restriction.

Authors:  Michael G Ross; Marie H Beall
Journal:  Semin Perinatol       Date:  2008-06       Impact factor: 3.300

3.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:  Ewan Birney; John A Stamatoyannopoulos; Anindya Dutta; Roderic Guigó; Thomas R Gingeras; Elliott H Margulies; Zhiping Weng; Michael Snyder; Emmanouil T Dermitzakis; Robert E Thurman; Michael S Kuehn; Christopher M Taylor; Shane Neph; Christoph M Koch; Saurabh Asthana; Ankit Malhotra; Ivan Adzhubei; Jason A Greenbaum; Robert M Andrews; Paul Flicek; Patrick J Boyle; Hua Cao; Nigel P Carter; Gayle K Clelland; Sean Davis; Nathan Day; Pawandeep Dhami; Shane C Dillon; Michael O Dorschner; Heike Fiegler; Paul G Giresi; Jeff Goldy; Michael Hawrylycz; Andrew Haydock; Richard Humbert; Keith D James; Brett E Johnson; Ericka M Johnson; Tristan T Frum; Elizabeth R Rosenzweig; Neerja Karnani; Kirsten Lee; Gregory C Lefebvre; Patrick A Navas; Fidencio Neri; Stephen C J Parker; Peter J Sabo; Richard Sandstrom; Anthony Shafer; David Vetrie; Molly Weaver; Sarah Wilcox; Man Yu; Francis S Collins; Job Dekker; Jason D Lieb; Thomas D Tullius; Gregory E Crawford; Shamil Sunyaev; William S Noble; Ian Dunham; France Denoeud; Alexandre Reymond; Philipp Kapranov; Joel Rozowsky; Deyou Zheng; Robert Castelo; Adam Frankish; Jennifer Harrow; Srinka Ghosh; Albin Sandelin; Ivo L Hofacker; Robert Baertsch; Damian Keefe; Sujit Dike; Jill Cheng; Heather A Hirsch; Edward A Sekinger; Julien Lagarde; Josep F Abril; Atif Shahab; Christoph Flamm; Claudia Fried; Jörg Hackermüller; Jana Hertel; Manja Lindemeyer; Kristin Missal; Andrea Tanzer; Stefan Washietl; Jan Korbel; Olof Emanuelsson; Jakob S Pedersen; Nancy Holroyd; Ruth Taylor; David Swarbreck; Nicholas Matthews; Mark C Dickson; Daryl J Thomas; Matthew T Weirauch; James Gilbert; Jorg Drenkow; Ian Bell; XiaoDong Zhao; K G Srinivasan; Wing-Kin Sung; Hong Sain Ooi; Kuo Ping Chiu; Sylvain Foissac; Tyler Alioto; Michael Brent; Lior Pachter; Michael L Tress; Alfonso Valencia; Siew Woh Choo; Chiou Yu Choo; Catherine Ucla; Caroline Manzano; Carine Wyss; Evelyn Cheung; Taane G Clark; James B Brown; Madhavan Ganesh; Sandeep Patel; Hari Tammana; Jacqueline Chrast; Charlotte N Henrichsen; Chikatoshi Kai; Jun Kawai; Ugrappa Nagalakshmi; Jiaqian Wu; Zheng Lian; Jin Lian; Peter Newburger; Xueqing Zhang; Peter Bickel; John S Mattick; Piero Carninci; Yoshihide Hayashizaki; Sherman Weissman; Tim Hubbard; Richard M Myers; Jane Rogers; Peter F Stadler; Todd M Lowe; Chia-Lin Wei; Yijun Ruan; Kevin Struhl; Mark Gerstein; Stylianos E Antonarakis; Yutao Fu; Eric D Green; Ulaş Karaöz; Adam Siepel; James Taylor; Laura A Liefer; Kris A Wetterstrand; Peter J Good; Elise A Feingold; Mark S Guyer; Gregory M Cooper; George Asimenos; Colin N Dewey; Minmei Hou; Sergey Nikolaev; Juan I Montoya-Burgos; Ari Löytynoja; Simon Whelan; Fabio Pardi; Tim Massingham; Haiyan Huang; Nancy R Zhang; Ian Holmes; James C Mullikin; Abel Ureta-Vidal; Benedict Paten; Michael Seringhaus; Deanna Church; Kate Rosenbloom; W James Kent; Eric A Stone; Serafim Batzoglou; Nick Goldman; Ross C Hardison; David Haussler; Webb Miller; Arend Sidow; Nathan D Trinklein; Zhengdong D Zhang; Leah Barrera; Rhona Stuart; David C King; Adam Ameur; Stefan Enroth; Mark C Bieda; Jonghwan Kim; Akshay A Bhinge; Nan Jiang; Jun Liu; Fei Yao; Vinsensius B Vega; Charlie W H Lee; Patrick Ng; Atif Shahab; Annie Yang; Zarmik Moqtaderi; Zhou Zhu; Xiaoqin Xu; Sharon Squazzo; Matthew J Oberley; David Inman; Michael A Singer; Todd A Richmond; Kyle J Munn; Alvaro Rada-Iglesias; Ola Wallerman; Jan Komorowski; Joanna C Fowler; Phillippe Couttet; Alexander W Bruce; Oliver M Dovey; Peter D Ellis; Cordelia F Langford; David A Nix; Ghia Euskirchen; Stephen Hartman; Alexander E Urban; Peter Kraus; Sara Van Calcar; Nate Heintzman; Tae Hoon Kim; Kun Wang; Chunxu Qu; Gary Hon; Rosa Luna; Christopher K Glass; M Geoff Rosenfeld; Shelley Force Aldred; Sara J Cooper; Anason Halees; Jane M Lin; Hennady P Shulha; Xiaoling Zhang; Mousheng Xu; Jaafar N S Haidar; Yong Yu; Yijun Ruan; Vishwanath R Iyer; Roland D Green; Claes Wadelius; Peggy J Farnham; Bing Ren; Rachel A Harte; Angie S Hinrichs; Heather Trumbower; Hiram Clawson; Jennifer Hillman-Jackson; Ann S Zweig; Kayla Smith; Archana Thakkapallayil; Galt Barber; Robert M Kuhn; Donna Karolchik; Lluis Armengol; Christine P Bird; Paul I W de Bakker; Andrew D Kern; Nuria Lopez-Bigas; Joel D Martin; Barbara E Stranger; Abigail Woodroffe; Eugene Davydov; Antigone Dimas; Eduardo Eyras; Ingileif B Hallgrímsdóttir; Julian Huppert; Michael C Zody; Gonçalo R Abecasis; Xavier Estivill; Gerard G Bouffard; Xiaobin Guan; Nancy F Hansen; Jacquelyn R Idol; Valerie V B Maduro; Baishali Maskeri; Jennifer C McDowell; Morgan Park; Pamela J Thomas; Alice C Young; Robert W Blakesley; Donna M Muzny; Erica Sodergren; David A Wheeler; Kim C Worley; Huaiyang Jiang; George M Weinstock; Richard A Gibbs; Tina Graves; Robert Fulton; Elaine R Mardis; Richard K Wilson; Michele Clamp; James Cuff; Sante Gnerre; David B Jaffe; Jean L Chang; Kerstin Lindblad-Toh; Eric S Lander; Maxim Koriabine; Mikhail Nefedov; Kazutoyo Osoegawa; Yuko Yoshinaga; Baoli Zhu; Pieter J de Jong
Journal:  Nature       Date:  2007-06-14       Impact factor: 49.962

4.  In vivo methylation patterns of the leptin promoter in human and mouse.

Authors:  Reinhard Stöger
Journal:  Epigenetics       Date:  2006-09-13       Impact factor: 4.528

5.  Association between small for gestational age and paternally inherited 5' insulin haplotypes.

Authors:  R M Adkins; J Krushkal; C K Klauser; E F Magann; J C Morrison; G Somes
Journal:  Int J Obes (Lond)       Date:  2007-08-14       Impact factor: 5.095

6.  Development of type 2 diabetes following intrauterine growth retardation in rats is associated with progressive epigenetic silencing of Pdx1.

Authors:  Jun H Park; Doris A Stoffers; Robert D Nicholls; Rebecca A Simmons
Journal:  J Clin Invest       Date:  2008-06       Impact factor: 14.808

Review 7.  Studies of the regulation and function of the Gs alpha gene Gnas using gene targeting technology.

Authors:  Lee S Weinstein; Tao Xie; Qing-Hong Zhang; Min Chen
Journal:  Pharmacol Ther       Date:  2007-04-21       Impact factor: 12.310

8.  Histone code modifications repress glucose transporter 4 expression in the intrauterine growth-restricted offspring.

Authors:  Nupur Raychaudhuri; Santanu Raychaudhuri; Manikkavasagar Thamotharan; Sherin U Devaskar
Journal:  J Biol Chem       Date:  2008-03-07       Impact factor: 5.157

9.  The 23K variant of the R23K polymorphism in the glucocorticoid receptor gene protects against postnatal growth failure and insulin resistance after preterm birth.

Authors:  Martijn J J Finken; Ingrid Meulenbelt; Friedo W Dekker; Marijke Frölich; Johannes A Romijn; P Eline Slagboom; Jan M Wit
Journal:  J Clin Endocrinol Metab       Date:  2007-09-11       Impact factor: 5.958

10.  Genomic profiling of CpG methylation and allelic specificity using quantitative high-throughput mass spectrometry: critical evaluation and improvements.

Authors:  Marcel W Coolen; Aaron L Statham; Margaret Gardiner-Garden; Susan J Clark
Journal:  Nucleic Acids Res       Date:  2007-09-13       Impact factor: 16.971

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  59 in total

Review 1.  DNA methylation in white blood cells: association with risk factors in epidemiologic studies.

Authors:  Mary Beth Terry; Lissette Delgado-Cruzata; Neomi Vin-Raviv; Hui Chen Wu; Regina M Santella
Journal:  Epigenetics       Date:  2011-07-01       Impact factor: 4.528

2.  Neonatal DNA methylation patterns associate with gestational age.

Authors:  James W Schroeder; Karen N Conneely; Joseph C Cubells; Varun Kilaru; D Jeffrey Newport; Bettina T Knight; Zachary N Stowe; Patricia A Brennan; Julia Krushkal; Frances A Tylavsky; Robert N Taylor; Ronald M Adkins; Alicia K Smith
Journal:  Epigenetics       Date:  2011-12       Impact factor: 4.528

3.  Epigenetic and genetic variation at the IGF2/H19 imprinting control region on 11p15.5 is associated with cerebellum weight.

Authors:  Ruth Pidsley; Emma Dempster; Claire Troakes; Safa Al-Sarraj; Jonathan Mill
Journal:  Epigenetics       Date:  2012-02       Impact factor: 4.528

4.  Neonatal genome-wide methylation patterns in relation to birth weight in the Norwegian Mother and Child Cohort.

Authors:  Stephanie M Engel; Bonnie R Joubert; Michael C Wu; Andrew F Olshan; Siri E Håberg; Per Magne Ueland; Wenche Nystad; Roy M Nilsen; Stein Emil Vollset; Shyamal D Peddada; Stephanie J London
Journal:  Am J Epidemiol       Date:  2014-02-20       Impact factor: 4.897

Review 5.  A review of inter- and intraspecific variation in the eutherian placenta.

Authors:  William E Gundling; Derek E Wildman
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-03-05       Impact factor: 6.237

6.  What changes in DNA methylation take place in individuals exposed to maternal smoking in utero?

Authors:  Melissa A Suter; Kjersti Aagaard
Journal:  Epigenomics       Date:  2012-04       Impact factor: 4.778

Review 7.  Maternal smoking as a model for environmental epigenetic changes affecting birthweight and fetal programming.

Authors:  Melissa A Suter; Amber M Anders; Kjersti M Aagaard
Journal:  Mol Hum Reprod       Date:  2012-11-08       Impact factor: 4.025

8.  Genes Downregulated in Endometriosis Are Located Near the Known Imprinting Genes.

Authors:  Hiroshi Kobayashi; Yumi Higashiura; Natsuki Koike; Juria Akasaka; Chiharu Uekuri; Kana Iwai; Emiko Niiro; Sachiko Morioka; Yuki Yamada
Journal:  Reprod Sci       Date:  2014-03-10       Impact factor: 3.060

Review 9.  Epigenetic mechanisms and models in the origins of asthma.

Authors:  Wilfried Karmaus; Ali H Ziyab; Todd Everson; John W Holloway
Journal:  Curr Opin Allergy Clin Immunol       Date:  2013-02

Review 10.  The role of redox signaling in epigenetics and cardiovascular disease.

Authors:  Gene H Kim; John J Ryan; Stephen L Archer
Journal:  Antioxid Redox Signal       Date:  2013-03-12       Impact factor: 8.401

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