| Literature DB >> 28176868 |
Etienne Yergeau1, Christine Michel2, Julien Tremblay3, Andrea Niemi2, Thomas L King4, Joanne Wyglinski3, Kenneth Lee4,5, Charles W Greer3.
Abstract
Climate change has resulted in an accelerated decline of Arctic sea ice since 2001 resulting in primary production increases and prolongation of the ice-free season within the Northwest Passage. The taxonomic and functional microbial community composition of the seawater and sea ice of the Canadian Arctic is not very well known. Bacterial communities from the bottom layer of sea ice cores and surface water from 23 locations around Cornwallis Island, NU, Canada, were extensively screened. The bacterial 16S rRNA gene was sequenced for all samples while shotgun metagenomics was performed on selected samples. Bacterial community composition showed large variation throughout the sampling area both for sea ice and seawater. Seawater and sea ice samples harbored significantly distinct microbial communities, both at different taxonomic levels and at the functional level. A key difference between the two sample types was the dominance of algae in sea ice samples, as visualized by the higher relative abundance of algae and photosynthesis-related genes in the metagenomic datasets and the higher chl a concentrations. The relative abundance of various OTUs and functional genes were significantly correlated with multiple environmental parameters, highlighting many potential environmental drivers and ecological strategies.Entities:
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Year: 2017 PMID: 28176868 PMCID: PMC5296724 DOI: 10.1038/srep42242
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1Location of sampling stations in the Canadian Arctic Archipelago (Nunavut).
The map was generated using Google Earth (version 7.1; https://www.google.com/earth/). Map data © Landsat/Copernicus/IBCAO.
Physico-chemical characterization of the surface waters and sea ice bottom samples.
| Salinity | Chl | DOC | TN | POC | Total Bac. | NO2+NO3 | PO4 | Si(OH)4 | Ice thickness | Snow thickness | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| (μg l−1) | (μM) | (μM) | (μg l−1) | (103 cells ml−1) | (μmol l−1) | (μmol l−1) | (mmol l−1) | (cm) | (cm) | ||
| Sea water (n = 23) | 32.1 ± 0.4 (31.1–32.8) | 0.3 ± 0.1 (0.1–0.5) | 63.6 ± 8.7 (48.5–87.3) | 11.7 ± 2.1 (6.9–14.5) | 33.6 ± 18.1 (19.6–106.7) | 163 ± 40 (105–257) | 7.8 ± 2.7 (3.5–11.1) | 1.1 ± 0.2 (0.7–1.3) | 10.9 ± 4.1 (4.4–17.6) | NA | NA |
| Bottom ice (n = 23) | 11.7 ± 2.5 (5.5–14.7) | 1387.8 ± 793.0 (176–2750) | 2197 ± 1799 (100–7153) | 139 ± 89 (17–347) | 47114 ± 27317 (3763–132712) | 5638 ± 2180 (948–9198) | 14.9 ± 13.7 (1.4–44.1) | 6.6 ± 4.7 (2.0–20.4) | 5.4 ± 3.2 (1.4–12.0) | 133.0 ± 19.5 (96.2–167.6) | 8.3 ± 4.3 (1.1–20.6) |
Values are means ± standard deviation (range). NA: not applicable.
Figure 2Principal coordinate ordinations of (a) UniFrac distances calculated from 16S rRNA gene, (b) Bray-Curtis distances calculated from relative abundance of species in metagenomic datasets and c) Bray-Curtis distances calculated from relative abundance of functions in metagenomic datasets.
Figure 3Community composition for each station at the phylum/class level for (a) sea ice based on 16S rRNA gene datasets, (b) seawater based on 16S rRNA gene datasets and (c) sea ice and seawater based on metagenomic datasets. The numbers on the x-axis represent the sampling station number as shown in Fig. 1. The “Others” category comprised 31 low-abundance phyla/classes.
Figure 4Relative abundance of the 15 most abundant OTUs in the 16S rRNA gene datasets for (a) sea ice samples and (b) seawater samples. The numbers on the x-axis represent the sampling station number as shown in Fig. 1.
Figure 5Relative abundance of the MG-RAST “Level 1” functional categories based on shotgun metagenomic datasets for sea ice and seawater.
The “Others” category comprised 14 other low-abundance MG-RAST “Level 1” functional categories.
Figure 6Relative abundance of the MG-RAST “Level 2” and “Level 3” functional categories based on shotgun metagenomic datasets for sea ice and seawater.