Literature DB >> 28169988

Chemolithotrophic processes in the bacterial communities on the surface of mineral-enriched biochars.

Jun Ye1,2, Stephen D Joseph3,4, Mukan Ji2, Shaun Nielsen1, David R G Mitchell5, Scott Donne6, Joseph Horvat7, Jianli Wang7, Paul Munroe3, Torsten Thomas1,8.   

Abstract

Biochar and mineral-enriched biochar (MEB) have been used as soil amendments to improve soil fertility, sequester carbon and mitigate greenhouse gas emissions. Such beneficial outcomes could be partially mediated by soil bacteria, however little is known about how they directly interact with biochar or MEB. We therefore analyzed the diversity and functions of bacterial communities on the surfaces of one biochar and two different MEBs after a 140-day incubation in soil. The results show that the biochar and the MEBs harbor distinct bacterial communities to the bulk soil. Communities on biochar and MEBs were dominated by a novel Gammaproteobacterium. Genome reconstruction combined with electron microscopy and high-resolution elemental analysis revealed that the bacterium generates energy from the oxidation of iron that is present on the surface. Two other bacteria belonging to the genus Thiobacillus and a novel group within the Oxalbacteraceae were enriched only on the MEBs and they had the genetic capacity for thiosulfate oxidation. All three surface-enriched bacteria also had the capacity to fix carbon dioxide, either in a potentially strictly autotrophic or mixotrophic manner. Our results show the dominance of chemolithotrophic processes on the surface of biochar and MEB that can contribute to carbon sequestration in soil.

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Year:  2017        PMID: 28169988      PMCID: PMC5437921          DOI: 10.1038/ismej.2016.187

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  63 in total

1.  Novel genes coding for lithotrophic sulfur oxidation of Paracoccus pantotrophus GB17.

Authors:  C G Friedrich; A Quentmeier; F Bardischewsky; D Rother; R Kraft; S Kostka; H Prinz
Journal:  J Bacteriol       Date:  2000-09       Impact factor: 3.490

2.  Microbial population structures in soil particle size fractions of a long-term fertilizer field experiment.

Authors:  A Sessitsch; A Weilharter; M H Gerzabek; H Kirchmann; E Kandeler
Journal:  Appl Environ Microbiol       Date:  2001-09       Impact factor: 4.792

3.  Structure of a bacterial cell surface decaheme electron conduit.

Authors:  Thomas A Clarke; Marcus J Edwards; Andrew J Gates; Andrea Hall; Gaye F White; Justin Bradley; Catherine L Reardon; Liang Shi; Alexander S Beliaev; Matthew J Marshall; Zheming Wang; Nicholas J Watmough; James K Fredrickson; John M Zachara; Julea N Butt; David J Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

4.  FastTree 2--approximately maximum-likelihood trees for large alignments.

Authors:  Morgan N Price; Paramvir S Dehal; Adam P Arkin
Journal:  PLoS One       Date:  2010-03-10       Impact factor: 3.240

5.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

6.  STAMP: statistical analysis of taxonomic and functional profiles.

Authors:  Donovan H Parks; Gene W Tyson; Philip Hugenholtz; Robert G Beiko
Journal:  Bioinformatics       Date:  2014-07-23       Impact factor: 6.937

7.  Redox properties of plant biomass-derived black carbon (biochar).

Authors:  Laura Klüpfel; Marco Keiluweit; Markus Kleber; Michael Sander
Journal:  Environ Sci Technol       Date:  2014-05-05       Impact factor: 9.028

8.  Simultaneous immobilization of lead and atrazine in contaminated soils using dairy-manure biochar.

Authors:  Xinde Cao; Lena Ma; Yuan Liang; Bin Gao; Willie Harris
Journal:  Environ Sci Technol       Date:  2011-05-04       Impact factor: 9.028

9.  SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.

Authors:  Elmar Pruesse; Jörg Peplies; Frank Oliver Glöckner
Journal:  Bioinformatics       Date:  2012-05-03       Impact factor: 6.937

10.  PhyloSift: phylogenetic analysis of genomes and metagenomes.

Authors:  Aaron E Darling; Guillaume Jospin; Eric Lowe; Frederick A Matsen; Holly M Bik; Jonathan A Eisen
Journal:  PeerJ       Date:  2014-01-09       Impact factor: 2.984

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  16 in total

1.  Potential use of high-throughput sequencing of bacterial communities for postmortem submersion interval estimation.

Authors:  Jing He; Juanjuan Guo; Xiaoliang Fu; Jifeng Cai
Journal:  Braz J Microbiol       Date:  2019-07-30       Impact factor: 2.476

2.  DNA-SIP Reveals the Diversity of Chemolithoautotrophic Bacteria Inhabiting Three Different Soil Types in Typical Karst Rocky Desertification Ecosystems in Southwest China.

Authors:  Baoqin Li; Zhe Li; Xiaoxu Sun; Qi Wang; Enzong Xiao; Weimin Sun
Journal:  Microb Ecol       Date:  2018-05-04       Impact factor: 4.552

3.  Aromatic-turmerone ameliorates DSS-induced ulcerative colitis via modulating gut microbiota in mice.

Authors:  Chunlian Li; Weicheng Zhang; Xianyi Wu; Qiuyang Cai; Zekai Tan; Zhengyi Hong; Shiyuan Huang; Yanghe Yuan; Lewen Yao; Lanyue Zhang
Journal:  Inflammopharmacology       Date:  2022-07-06       Impact factor: 5.093

4.  Fungal Diversity in Barley Under Different Storage Conditions.

Authors:  Dongmei Cao; Yuhao Lou; Xiujie Jiang; Dongjie Zhang; Junmei Liu
Journal:  Front Microbiol       Date:  2022-06-22       Impact factor: 6.064

5.  Gcd Gene Diversity of Quinoprotein Glucose Dehydrogenase in the Sediment of Sancha Lake and Its Response to the Environment.

Authors:  Yong Li; Jianqiang Zhang; Zhiliang Gong; Wenlai Xu; Zishen Mou
Journal:  Int J Environ Res Public Health       Date:  2018-12-20       Impact factor: 3.390

6.  Acupuncture Regulating Gut Microbiota in Abdominal Obese Rats Induced by High-Fat Diet.

Authors:  Haiying Wang; Qiang Wang; Cuimei Liang; Mingxing Su; Xin Wang; Hua Li; Hui Hu; Hongjuan Fang
Journal:  Evid Based Complement Alternat Med       Date:  2019-06-02       Impact factor: 2.629

7.  Bacterial Community Selection of Russula griseocarnosa Mycosphere Soil.

Authors:  Fei Yu; Jun-Feng Liang; Jie Song; Sheng-Kun Wang; Jun-Kun Lu
Journal:  Front Microbiol       Date:  2020-03-25       Impact factor: 5.640

8.  Biochar Improves Soil-Tomato Plant, Tomato Production, and Economic Benefits under Reduced Nitrogen Application in Northwestern China.

Authors:  Lili Guo; Huiwen Yu; Mourad Kharbach; Wenqian Zhang; Jingwei Wang; Wenquan Niu
Journal:  Plants (Basel)       Date:  2021-04-13

9.  Bacterial Diversity in Roots, Stems, and Leaves of Chinese Medicinal Plant Paris polyphylla var. yunnanensis.

Authors:  Tian-Hao Liu; Yin Zhou; Wen-Cong Tao; Yang Liu; Xiao-Mei Zhang; Shou-Zheng Tian
Journal:  Pol J Microbiol       Date:  2020-03-11

10.  Time-course relationship between environmental factors and microbial diversity in tobacco soil.

Authors:  Zhaobao Wang; Yan Yang; Yuzhen Xia; Tao Wu; Jie Zhu; Jianming Yang; Zhengfeng Li
Journal:  Sci Rep       Date:  2019-12-27       Impact factor: 4.379

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