Literature DB >> 28161784

Benchmark, DFT assessments, cooperativity, and energy decomposition analysis of the hydrogen bonds in HCN/HNC oligomeric complexes.

Paulo McMiller C de Oliveira1, Juliana A B Silva2, Ricardo L Longo3.   

Abstract

Hydrogen cyanide (HCN) and its tautomer hydrogen isocyanide (HNC) are relevant for extraterrestrial chemistry and possible relation to the origin of biomolecules. Several processes and reactions involving these molecules depend on their intermolecular interactions that can lead to aggregates and liquids especially due to the hydrogen bonds. It is thus important to comprehend, to describe, and to quantify their hydrogen bonds, mainly their nature and the cooperativity effects. A systematic study of all linear complexes up to pentamers of HCN and HNC is presented. CCSD(T)/CBS energy calculations, with and without basis set superposition error (BSSE) corrections for energies and geometries, provided a suitable set of benchmarks. Approximated methods based on the density functional theory (DFT) such as BP86, PBE, TPSS, B3LYP, CAM-B3LYP with and without dispersion corrections and long-range corrections, were assessed to describe the interaction energies and cooperativity effects. These assessments are relevant to select DFT functionals for liquid simulations. Energy decomposition analysis was performed at the PBE/STO-TZ2P level and provided insights into the nature of the hydrogen bonds, which are dominated by the electrostatic component. In addition, several linear relationships between the various energy components and the interaction energy were obtained. The cooperativity energy was also found to be practically linear with respect to the interaction energy, which may be relevant for designing and/or correcting empirical force fields. Graphical Abstract Hydrogen bonds in HCN/HNC oligomeric complexesᅟ.

Entities:  

Keywords:  BSSE corrections; CCSD(T)/CBS; Cooperativity; Interaction energy; PBE

Year:  2017        PMID: 28161784     DOI: 10.1007/s00894-017-3235-x

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  35 in total

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Journal:  Phys Rev Lett       Date:  1996-10-28       Impact factor: 9.161

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Authors:  Thomas Steiner
Journal:  Angew Chem Int Ed Engl       Date:  2002-01-04       Impact factor: 15.336

3.  Interaction energies and NMR indirect nuclear spin-spin coupling constants in linear HCN and HNC complexes.

Authors:  Patricio F Provasi; Gustavo A Aucar; Marina Sanchez; Ibon Alkorta; José Elguero; Stephan P A Sauer
Journal:  J Phys Chem A       Date:  2005-07-28       Impact factor: 2.781

4.  Effect of hydrogen bond cooperativity on the behavior of water.

Authors:  Kevin Stokely; Marco G Mazza; H Eugene Stanley; Giancarlo Franzese
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-08       Impact factor: 11.205

5.  Cooperative hydrogen bonding in trimers involving HCN and HBO.

Authors:  Sean A C McDowell; A David Buckingham
Journal:  Phys Chem Chem Phys       Date:  2011-06-01       Impact factor: 3.676

6.  Large changes of static electric properties induced by hydrogen bonding: an ab initio study of linear HCN oligomers.

Authors:  Robert W Góra; Robert Zaleśny; Agnieszka Zawada; Wojciech Bartkowiak; Bartłomiej Skwara; Manthos G Papadopoulos; Daniel L Silva
Journal:  J Phys Chem A       Date:  2011-04-14       Impact factor: 2.781

7.  The cooperativity between hydrogen and halogen bond in the XY···HNC···XY (X, Y = F, Cl, Br) complexes.

Authors:  Qiang Zhao; Dacheng Feng; Jingcheng Hao
Journal:  J Mol Model       Date:  2011-02-02       Impact factor: 1.810

8.  CLOPPA-IPPP analysis of cooperative effects in h-bonded molecular complexes. 2. Application to the static molecular polarizability tensor.

Authors:  Claudia G Giribet; Martín C Ruiz de Azúa
Journal:  J Phys Chem A       Date:  2010-01-21       Impact factor: 2.781

9.  Chemical evolution: the mechanism of the formation of adenine under prebiotic conditions.

Authors:  Debjani Roy; Katayoun Najafian; Paul von Ragué Schleyer
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-19       Impact factor: 11.205

10.  Influence of the pi-pi interaction on the hydrogen bonding capacity of stacked DNA/RNA bases.

Authors:  Pierre Mignon; Stefan Loverix; Jan Steyaert; Paul Geerlings
Journal:  Nucleic Acids Res       Date:  2005-03-23       Impact factor: 16.971

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