Literature DB >> 28148743

Phytoplankton growth rate modelling: can spectroscopic cell chemotyping be superior to physiological predictors?

Andrea Fanesi1, Heiko Wagner2, Christian Wilhelm1,3.   

Abstract

Climate change has a strong impact on phytoplankton communities and water quality. However, the development of robust techniques to assess phytoplankton growth is still in progress. In this study, the growth rate of phytoplankton cells grown at different temperatures was modelled based on conventional physiological traits (e.g. chlorophyll, carbon and photosynthetic parameters) using the partial least square regression (PLSR) algorithm and compared with a new approach combining Fourier transform infrared-spectroscopy and PLSR. In this second model, it is assumed that the macromolecular composition of phytoplankton cells represents an intracellular marker for growth. The models have comparable high predictive power (R2 > 0.8) and low error in predicting new observations. Interestingly, not all of the predictors present the same weight in the modelling of growth rate. A set of specific parameters, such as non-photochemical fluorescence quenching (NPQ) and the quantum yield of carbon production in the first model, and lipid, protein and carbohydrate contents for the second one, strongly covary with cell growth rate regardless of the taxonomic position of the phytoplankton species investigated. This reflects a set of specific physiological adjustments covarying with growth rate, conserved among taxonomically distant algal species that might be used as guidelines for the improvement of modern primary production models. The high predictive power of both sets of cellular traits for growth rate is of great importance for applied phycological studies. Our approach may find application as a quality control tool for the monitoring of phytoplankton populations in natural communities or in photobioreactors.
© 2017 The Author(s).

Entities:  

Keywords:  Fourier transform infrared-spectroscopy; chemometric analysis; partial least square regression; phytoplankton; water monitoring

Mesh:

Substances:

Year:  2017        PMID: 28148743      PMCID: PMC5310597          DOI: 10.1098/rspb.2016.1956

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  32 in total

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Authors:  Heiko Wagner; Zhixin Liu; Uwe Langner; Katja Stehfest; Christian Wilhelm
Journal:  J Biophotonics       Date:  2010-08       Impact factor: 3.207

2.  Phytoplankton. The fate of photons absorbed by phytoplankton in the global ocean.

Authors:  Hanzhi Lin; Fedor I Kuzminov; Jisoo Park; SangHoon Lee; Paul G Falkowski; Maxim Y Gorbunov
Journal:  Science       Date:  2016-01-07       Impact factor: 47.728

3.  A complete energy balance from photons to new biomass reveals a light- and nutrient-dependent variability in the metabolic costs of carbon assimilation.

Authors:  Torsten Jakob; Heiko Wagner; Katja Stehfest; Christian Wilhelm
Journal:  J Exp Bot       Date:  2007-05-04       Impact factor: 6.992

Review 4.  Subcommunity FTIR-spectroscopy to determine physiological cell states.

Authors:  Heiko Wagner; Susanne Dunker; Zhixin Liu; Christian Wilhelm
Journal:  Curr Opin Biotechnol       Date:  2012-10-08       Impact factor: 9.740

5.  Carbon and nitrogen economy of 24 wild species differing in relative growth rate.

Authors:  H Poorter; C Remkes; H Lambers
Journal:  Plant Physiol       Date:  1990-10       Impact factor: 8.340

6.  ECOLOGICAL AND EVOLUTIONARY IMPLICATIONS OF CARBON ALLOCATION IN MARINE PHYTOPLANKTON AS A FUNCTION OF NITROGEN AVAILABILITY: A FOURIER TRANSFORM INFRARED SPECTROSCOPY APPROACH(1).

Authors:  Matteo Palmucci; Simona Ratti; Mario Giordano
Journal:  J Phycol       Date:  2011-03-21       Impact factor: 2.923

7.  THE IMPACT OF NONPHOTOCHEMICAL QUENCHING OF FLUORESCENCE ON THE PHOTON BALANCE IN DIATOMS UNDER DYNAMIC LIGHT CONDITIONS(1).

Authors:  Wanwen Su; Torsten Jakob; Christian Wilhelm
Journal:  J Phycol       Date:  2012-03-19       Impact factor: 2.923

8.  Surveillance of C-allocation in microalgal cells.

Authors:  Heiko Wagner; Anne Jungandreas; Andrea Fanesi; Christian Wilhelm
Journal:  Metabolites       Date:  2014-06-19

9.  Using Fourier transform IR spectroscopy to analyze biological materials.

Authors:  Matthew J Baker; Júlio Trevisan; Paul Bassan; Rohit Bhargava; Holly J Butler; Konrad M Dorling; Peter R Fielden; Simon W Fogarty; Nigel J Fullwood; Kelly A Heys; Caryn Hughes; Peter Lasch; Pierre L Martin-Hirsch; Blessing Obinaju; Ganesh D Sockalingum; Josep Sulé-Suso; Rebecca J Strong; Michael J Walsh; Bayden R Wood; Peter Gardner; Francis L Martin
Journal:  Nat Protoc       Date:  2014-07-03       Impact factor: 13.491

10.  Marine phytoplankton temperature versus growth responses from polar to tropical waters--outcome of a scientific community-wide study.

Authors:  Philip W Boyd; Tatiana A Rynearson; Evelyn A Armstrong; Feixue Fu; Kendra Hayashi; Zhangxi Hu; David A Hutchins; Raphael M Kudela; Elena Litchman; Margaret R Mulholland; Uta Passow; Robert F Strzepek; Kerry A Whittaker; Elizabeth Yu; Mridul K Thomas
Journal:  PLoS One       Date:  2013-05-21       Impact factor: 3.240

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  1 in total

1.  Study on the Changes in Immobilized Petroleum-Degrading Bacteria Beads in a Continuous Bioreactor Related to Physicochemical Performance, Degradation Ability, and Microbial Community.

Authors:  Yixuan Liu; Weisi Li; Yanlu Qiao; Fangying Yu; Bowen Wang; Jianliang Xue; Mianmian Wang; Qing Jiang; Zhibin Zhou
Journal:  Int J Environ Res Public Health       Date:  2022-09-09       Impact factor: 4.614

  1 in total

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