Literature DB >> 28146348

Positional Variance in NMR Crystallography.

Albert Hofstetter1, Lyndon Emsley1.   

Abstract

We propose a method to quantify positional uncertainties in crystal structures determined by chemical-shift-based NMR crystallography. The method combines molecular dynamics simulations and density functional theory calculations with experimental and computational chemical shift uncertainties. In this manner we find the average positional accuracy as well as the isotropic and anisotropic positional accuracy associated with each atom in a crystal structure determined by NMR crystallography. The approach is demonstrated on the crystal structures of cocaine, flutamide, flufenamic acid, the K salt of penicillin G, and form 4 of the drug 4-[4-(2-adamantylcarbamoyl)-5-tert-butylpyrazol-1-yl]benzoic acid (AZD8329). We find that, for the crystal structure of cocaine, the uncertainty corresponds to a positional RMSD of 0.17 Å. This is a factor of 2.5 less than for single-crystal X-ray-diffraction-based structure determination.

Entities:  

Year:  2017        PMID: 28146348     DOI: 10.1021/jacs.6b12705

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  10 in total

1.  TensorView: A software tool for displaying NMR tensors.

Authors:  Robert P Young; Corbin R Lewis; Chen Yang; Luther Wang; James K Harper; Leonard J Mueller
Journal:  Magn Reson Chem       Date:  2018-11-06       Impact factor: 2.447

2.  Predicting anisotropic thermal displacements for hydrogens from solid-state NMR: a study on hydrogen bonding in polymorphs of palmitic acid.

Authors:  Luther Wang; Fernando J Uribe-Romo; Leonard J Mueller; James K Harper
Journal:  Phys Chem Chem Phys       Date:  2018-03-28       Impact factor: 3.676

3.  Self-Consistent Framework Connecting Experimental Proxies of Protein Dynamics with Configurational Entropy.

Authors:  Markus Fleck; Anton A Polyansky; Bojan Zagrovic
Journal:  J Chem Theory Comput       Date:  2018-06-08       Impact factor: 6.578

4.  Crystal Engineering of Supramolecular 1,4-Benzene Bisamides by Side-Chain Modification - Towards Tuneable Anisotropic Morphologies and Surfaces.

Authors:  Kasper P van der Zwan; Christoph Steinlein; Klaus Kreger; Hans-Werner Schmidt; Jürgen Senker
Journal:  Chemphyschem       Date:  2021-11-08       Impact factor: 3.520

Review 5.  NMR crystallography: structure and properties of materials from solid-state nuclear magnetic resonance observables.

Authors:  David L Bryce
Journal:  IUCrJ       Date:  2017-05-02       Impact factor: 4.769

6.  First-Principles Study of AlPO₄-H3, a Hydrated Aluminophosphate Zeotype Containing Two Different Types of Adsorbed Water Molecules.

Authors:  Michael Fischer
Journal:  Molecules       Date:  2019-03-06       Impact factor: 4.411

7.  Imaging active site chemistry and protonation states: NMR crystallography of the tryptophan synthase α-aminoacrylate intermediate.

Authors:  Jacob B Holmes; Viktoriia Liu; Bethany G Caulkins; Eduardo Hilario; Rittik K Ghosh; Victoria N Drago; Robert P Young; Jennifer A Romero; Adam D Gill; Paul M Bogie; Joana Paulino; Xiaoling Wang; Gwladys Riviere; Yuliana K Bosken; Jochem Struppe; Alia Hassan; Jevgeni Guidoulianov; Barbara Perrone; Frederic Mentink-Vigier; Chia-En A Chang; Joanna R Long; Richard J Hooley; Timothy C Mueser; Michael F Dunn; Leonard J Mueller
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-11       Impact factor: 11.205

8.  How Strong Is the Hydrogen Bond in Hybrid Perovskites?

Authors:  Katrine L Svane; Alexander C Forse; Clare P Grey; Gregor Kieslich; Anthony K Cheetham; Aron Walsh; Keith T Butler
Journal:  J Phys Chem Lett       Date:  2017-12-11       Impact factor: 6.475

9.  Chemical shifts in molecular solids by machine learning.

Authors:  Federico M Paruzzo; Albert Hofstetter; Félix Musil; Sandip De; Michele Ceriotti; Lyndon Emsley
Journal:  Nat Commun       Date:  2018-10-29       Impact factor: 14.919

10.  NMR-Based Configurational Assignments of Natural Products: Gibbs Sampling and Bayesian Inference Using Floating Chirality Distance Geometry Calculations.

Authors:  Stefan Immel; Matthias Köck; Michael Reggelin
Journal:  Mar Drugs       Date:  2021-12-22       Impact factor: 5.118

  10 in total

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