Literature DB >> 28140758

Diversity of culturable bacteria in deep-sea water from the South Atlantic Ocean.

Wang Kai1,2, Yan Peisheng1,2, Ma Rui1, Jia Wenwen1, Shao Zongze2,3.   

Abstract

The variability of culturable bacterial diversity and distribution was studied by phylogenetic analysis of 16S rRNA sequences. Seventeen water samples were examined and were collected, from different depths in the range of 5 m to 2700 m at 3 sampling sites (CTD06, CTD10 and CTD11) in the South Atlantic Ocean. Phylogenetic analysis of 16S rRNA gene sequences revealed a significant diversity of culturable bacteria. A total of 247 strains clustered into 8 classes: γ-Proteobacteria, α-Proteobacteria, Actinobacteria, Actinomycetales, Bacilli, Flavobacteria, Opitutae and Sphingobacteria. The 17 water samples were dominated by populations of strains belonging to the genus Erythrobacter (16.60%). Of the 247 strains, 10 were potential new species and might form a minor population in the deep sea. To our knowledge, this is the first report to analyze the diversity of culturable bacteria in the South Atlantic Ocean from different depths across the water column.

Entities:  

Keywords:  16S rRNA; South Atlantic Ocean; bacterial diversity; deep sea; phylogenetic analysis

Mesh:

Substances:

Year:  2017        PMID: 28140758      PMCID: PMC5639861          DOI: 10.1080/21655979.2017.1284711

Source DB:  PubMed          Journal:  Bioengineered        ISSN: 2165-5979            Impact factor:   3.269


  28 in total

1.  Fine-scale phylogenetic architecture of a complex bacterial community.

Authors:  Silvia G Acinas; Vanja Klepac-Ceraj; Dana E Hunt; Chanathip Pharino; Ivica Ceraj; Daniel L Distel; Martin F Polz
Journal:  Nature       Date:  2004-07-29       Impact factor: 49.962

2.  Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.

Authors:  Patrick D Schloss; Jo Handelsman
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

3.  Genetic analysis of housekeeping genes reveals a deep-sea ecotype of Alteromonas macleodii in the Mediterranean Sea.

Authors:  Arantxa López-López; Sergio G Bartual; Lucas Stal; Olga Onyshchenko; Francisco Rodríguez-Valera
Journal:  Environ Microbiol       Date:  2005-05       Impact factor: 5.491

4.  Leeuwenhoekiella blandensis sp. nov., a genome-sequenced marine member of the family Flavobacteriaceae.

Authors:  Jarone Pinhassi; John P Bowman; Olga I Nedashkovskaya; Itziar Lekunberri; Laura Gomez-Consarnau; Carlos Pedrós-Alió
Journal:  Int J Syst Evol Microbiol       Date:  2006-07       Impact factor: 2.747

5.  Water stress amelioration and plant growth promotion in wheat plants by osmotic stress tolerant bacteria.

Authors:  U Chakraborty; B N Chakraborty; A P Chakraborty; P L Dey
Journal:  World J Microbiol Biotechnol       Date:  2012-12-14       Impact factor: 3.312

6.  Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing.

Authors:  Hélène Agogué; Dominique Lamy; Phillip R Neal; Mitchell L Sogin; Gerhard J Herndl
Journal:  Mol Ecol       Date:  2010-12-09       Impact factor: 6.185

7.  Deep-sea biodiversity in the Mediterranean Sea: the known, the unknown, and the unknowable.

Authors:  Roberto Danovaro; Joan Batista Company; Cinzia Corinaldesi; Gianfranco D'Onghia; Bella Galil; Cristina Gambi; Andrew J Gooday; Nikolaos Lampadariou; Gian Marco Luna; Caterina Morigi; Karine Olu; Paraskevi Polymenakou; Eva Ramirez-Llodra; Anna Sabbatini; Francesc Sardà; Myriam Sibuet; Anastasios Tselepides
Journal:  PLoS One       Date:  2010-08-02       Impact factor: 3.240

8.  Erythrobacter flavus sp. nov., a slight halophile from the East Sea in Korea.

Authors:  Jung-Hoon Yoon; Hongik Kim; In-Gi Kim; Kook Hee Kang; Yong-Ha Park
Journal:  Int J Syst Evol Microbiol       Date:  2003-07       Impact factor: 2.747

Review 9.  Prokaryotes: the unseen majority.

Authors:  W B Whitman; D C Coleman; W J Wiebe
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

10.  Genome Sequence of Salt-Tolerant Bacillus safensis Strain VK, Isolated from Saline Desert Area of Gujarat, India.

Authors:  V V Kothari; R K Kothari; C R Kothari; V D Bhatt; N M Nathani; P G Koringa; C G Joshi; B R M Vyas
Journal:  Genome Announc       Date:  2013-09-05
View more
  9 in total

Review 1.  Exploring Newer Biosynthetic Gene Clusters in Marine Microbial Prospecting.

Authors:  Manigundan Kaari; Radhakrishnan Manikkam; Abirami Baskaran
Journal:  Mar Biotechnol (NY)       Date:  2022-04-08       Impact factor: 3.619

2.  The Bristol Sponge Microbiome Collection: A Unique Repository of Deep-Sea Microorganisms and Associated Natural Products.

Authors:  Sam E Williams; Henry L Stennett; Catherine R Back; Kavita Tiwari; Jorge Ojeda Gomez; Martin R Challand; Katharine R Hendry; James Spencer; Angela E Essex-Lopresti; Christine L Willis; Paul Curnow; Paul R Race
Journal:  Antibiotics (Basel)       Date:  2020-08-13

3.  Diversity of cultivable bacteria from deep-sea sediments of the Colombian Caribbean and their potential in bioremediation.

Authors:  Lina Marcela Blandón; Mario Alejandro Marín; Marynes Quintero; Laura Marcela Jutinico-Shubach; Manuela Montoya-Giraldo; Marisol Santos-Acevedo; Javier Gómez-León
Journal:  Antonie Van Leeuwenhoek       Date:  2022-01-23       Impact factor: 2.271

4.  Diversity and distribution of marine heterotrophic bacteria from a large culture collection.

Authors:  Isabel Sanz-Sáez; Guillem Salazar; Pablo Sánchez; Elena Lara; Marta Royo-Llonch; Elisabet L Sà; Teresa Lucena; María J Pujalte; Dolors Vaqué; Carlos M Duarte; Josep M Gasol; Carlos Pedrós-Alió; Olga Sánchez; Silvia G Acinas
Journal:  BMC Microbiol       Date:  2020-07-13       Impact factor: 3.605

5.  Cultivation of Sponge-Associated Bacteria from Agelas sventres and Xestospongia muta Collected from Different Depths.

Authors:  Anak Agung Gede Indraningrat; Sebastian Micheller; Mandy Runderkamp; Ina Sauerland; Leontine E Becking; Hauke Smidt; Detmer Sipkema
Journal:  Mar Drugs       Date:  2019-10-11       Impact factor: 5.118

6.  Decoding Antioxidant and Antibacterial Potentials of Malaysian Green Seaweeds: Caulerpa racemosa and Caulerpa lentillifera.

Authors:  Wing-Fai Yap; Vangene Tay; Sie-Hui Tan; Yoon-Yen Yow; Jactty Chew
Journal:  Antibiotics (Basel)       Date:  2019-09-17

Review 7.  Marine Bacterial Secondary Metabolites: A Treasure House for Structurally Unique and Effective Antimicrobial Compounds.

Authors:  Ramanathan Srinivasan; Arunachalam Kannappan; Chunlei Shi; Xiangmin Lin
Journal:  Mar Drugs       Date:  2021-09-23       Impact factor: 5.118

8.  Prevalence of Heterotrophic Methylmercury Detoxifying Bacteria across Oceanic Regions.

Authors:  Isabel Sanz-Sáez; Carla Pereira-García; Andrea G Bravo; Laura Trujillo; Martí Pla I Ferriol; Miguel Capilla; Pablo Sánchez; Rosa Carmen Rodríguez Martín-Doimeadios; Silvia G Acinas; Olga Sánchez
Journal:  Environ Sci Technol       Date:  2022-03-04       Impact factor: 9.028

9.  Marine bacterial communities in the upper gulf of Thailand assessed by Illumina next-generation sequencing platform.

Authors:  Pongrawee Nimnoi; Neelawan Pongsilp
Journal:  BMC Microbiol       Date:  2020-01-23       Impact factor: 3.605

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.