Literature DB >> 28139910

Cell-Selective Bioorthogonal Metabolic Labeling of RNA.

Kim Nguyen1, Michael Fazio1, Miles Kubota1, Sarah Nainar1, Chao Feng1, Xiang Li1, Scott X Atwood1, Timothy W Bredy1, Robert C Spitale1.   

Abstract

Stringent chemical methods to profile RNA expression within discrete cellular populations remains a key challenge in biology. To address this issue, we developed a chemical-genetic strategy for metabolic labeling of RNA. Cell-specific labeling of RNA can be profiled and imaged using bioorthogonal chemistry. We anticipate that this platform will provide the community with a much-needed chemical toolset for cell-type specific profiling of cell-specific transcriptomes derived from complex biological systems.

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Year:  2017        PMID: 28139910     DOI: 10.1021/jacs.6b11401

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

1.  Posttranscriptional Suzuki-Miyaura Cross-Coupling Yields Labeled RNA for Conformational Analysis and Imaging.

Authors:  Manisha B Walunj; Seergazhi G Srivatsan
Journal:  Methods Mol Biol       Date:  2020

Review 2.  "Clicking" Gene Therapeutics: A Successful Union of Chemistry and Biomedicine for New Solutions.

Authors:  Kira Astakhova; Roslyn Ray; Maria Taskova; Jesper Uhd; Annika Carstens; Kevin Morris
Journal:  Mol Pharm       Date:  2018-02-26       Impact factor: 4.939

3.  Bioorthogonal Metabolic Labeling of Nascent RNA in Neurons Improves the Sensitivity of Transcriptome-Wide Profiling.

Authors:  Esmi L Zajaczkowski; Qiong-Yi Zhao; Zong Hong Zhang; Xiang Li; Wei Wei; Paul R Marshall; Laura J Leighton; Sarah Nainar; Chao Feng; Robert C Spitale; Timothy W Bredy
Journal:  ACS Chem Neurosci       Date:  2018-06-15       Impact factor: 4.418

4.  Expanding the Scope of RNA Metabolic Labeling with Vinyl Nucleosides and Inverse Electron-Demand Diels-Alder Chemistry.

Authors:  Miles Kubota; Sarah Nainar; Shane M Parker; Whitney England; Filipp Furche; Robert C Spitale
Journal:  ACS Chem Biol       Date:  2019-07-25       Impact factor: 5.100

5.  Spatially Restricting Bioorthogonal Nucleoside Biosynthesis Enables Selective Metabolic Labeling of the Mitochondrial Transcriptome.

Authors:  Kim Nguyen; Mahima B Aggarwal; Chao Feng; Gabriela Balderrama; Michael Fazio; Ali Mortazavi; Robert C Spitale
Journal:  ACS Chem Biol       Date:  2018-05-17       Impact factor: 5.100

6.  Photo-controlled cell-specific metabolic labeling of RNA.

Authors:  C Feng; Y Li; R C Spitale
Journal:  Org Biomol Chem       Date:  2017-06-21       Impact factor: 3.876

7.  N6-Allyladenosine: A New Small Molecule for RNA Labeling Identified by Mutation Assay.

Authors:  Xiao Shu; Qing Dai; Tong Wu; Ian R Bothwell; Yanan Yue; Zezhou Zhang; Jie Cao; Qili Fei; Minkui Luo; Chuan He; Jianzhao Liu
Journal:  J Am Chem Soc       Date:  2017-11-15       Impact factor: 15.419

8.  Superresolution imaging of individual replication forks reveals unexpected prodrug resistance mechanism.

Authors:  Therese Triemer; Alessandra Messikommer; Stella M K Glasauer; Jawad Alzeer; Miriam H Paulisch; Nathan W Luedtke
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-29       Impact factor: 11.205

9.  Nucleic Acid Conformation Influences Postsynthetic Suzuki-Miyaura Labeling of Oligonucleotides.

Authors:  Manisha B Walunj; Seergazhi G Srivatsan
Journal:  Bioconjug Chem       Date:  2020-10-22       Impact factor: 4.774

10.  A Bump-Hole Strategy for Increased Stringency of Cell-Specific Metabolic Labeling of RNA.

Authors:  Kim Nguyen; Miles Kubota; Jon Del Arco; Chao Feng; Monika Singha; Samantha Beasley; Jasmine Sakr; Sunil P Gandhi; Matthew Blurton-Jones; Jesus Fernández Lucas; Robert C Spitale
Journal:  ACS Chem Biol       Date:  2020-11-21       Impact factor: 5.100

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