Literature DB >> 28139671

Multicut brings automated neurite segmentation closer to human performance.

Thorsten Beier1, Constantin Pape1, Nasim Rahaman1, Timo Prange1, Stuart Berg2, Davi D Bock2, Albert Cardona2, Graham W Knott3, Stephen M Plaza2, Louis K Scheffer2, Ullrich Koethe1, Anna Kreshuk1,2, Fred A Hamprecht1,2.   

Abstract

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Year:  2017        PMID： 28139671     DOI： 10.1038/nmeth.4151

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  2 in total

1.  Space-time wiring specificity supports direction selectivity in the retina.

Authors:  Jinseop S Kim; Matthew J Greene; Aleksandar Zlateski; Kisuk Lee; Mark Richardson; Srinivas C Turaga; Michael Purcaro; Matthew Balkam; Amy Robinson; Bardia F Behabadi; Michael Campos; Winfried Denk; H Sebastian Seung
Journal:  Nature       Date:  2014-05-04       Impact factor: 49.962

2.  Crowdsourcing the creation of image segmentation algorithms for connectomics.

Authors:  Ignacio Arganda-Carreras; Srinivas C Turaga; Daniel R Berger; Dan Cireşan; Alessandro Giusti; Luca M Gambardella; Jürgen Schmidhuber; Dmitry Laptev; Sarvesh Dwivedi; Joachim M Buhmann; Ting Liu; Mojtaba Seyedhosseini; Tolga Tasdizen; Lee Kamentsky; Radim Burget; Vaclav Uher; Xiao Tan; Changming Sun; Tuan D Pham; Erhan Bas; Mustafa G Uzunbas; Albert Cardona; Johannes Schindelin; H Sebastian Seung
Journal:  Front Neuroanat       Date:  2015-11-05       Impact factor: 3.856
  2 in total
  26 in total

Review 1.  Neuronal cell-type classification: challenges, opportunities and the path forward.

Authors:  Hongkui Zeng; Joshua R Sanes
Journal:  Nat Rev Neurosci       Date:  2017-08-03       Impact factor: 34.870

Review 2.  Visualizing Mitochondrial Form and Function within the Cell.

Authors:  Brian Glancy
Journal:  Trends Mol Med       Date:  2019-11-06       Impact factor: 11.951

3.  MitoEM Dataset: Large-scale 3D Mitochondria Instance Segmentation from EM Images.

Authors:  Donglai Wei; Zudi Lin; Daniel Franco-Barranco; Nils Wendt; Xingyu Liu; Wenjie Yin; Xin Huang; Aarush Gupta; Won-Dong Jang; Xueying Wang; Ignacio Arganda-Carreras; Jeff W Lichtman; Hanspeter Pfister
Journal:  Med Image Comput Comput Assist Interv       Date:  2020-09-29

4.  Multimodal Analysis of Cell Types in a Hypothalamic Node Controlling Social Behavior.

Authors:  Dong-Wook Kim; Zizhen Yao; Lucas T Graybuck; Tae Kyung Kim; Thuc Nghi Nguyen; Kimberly A Smith; Olivia Fong; Lynn Yi; Noushin Koulena; Nico Pierson; Sheel Shah; Liching Lo; Allan-Hermann Pool; Yuki Oka; Lior Pachter; Long Cai; Bosiljka Tasic; Hongkui Zeng; David J Anderson
Journal:  Cell       Date:  2019-10-17       Impact factor: 41.582

Review 5.  Primer on machine learning: utilization of large data set analyses to individualize pain management.

Authors:  Parisa Rashidi; David A Edwards; Patrick J Tighe
Journal:  Curr Opin Anaesthesiol       Date:  2019-10       Impact factor: 2.706

Review 6.  Convolutional nets for reconstructing neural circuits from brain images acquired by serial section electron microscopy.

Authors:  Kisuk Lee; Nicholas Turner; Thomas Macrina; Jingpeng Wu; Ran Lu; H Sebastian Seung
Journal:  Curr Opin Neurobiol       Date:  2019-05-06       Impact factor: 6.627

7.  Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis.

Authors:  T Lohoff; S Ghazanfar; A Missarova; N Koulena; N Pierson; J A Griffiths; E S Bardot; C-H L Eng; R C V Tyser; R Argelaguet; C Guibentif; S Srinivas; J Briscoe; B D Simons; A-K Hadjantonakis; B Göttgens; W Reik; J Nichols; L Cai; J C Marioni
Journal:  Nat Biotechnol       Date:  2021-09-06       Impact factor: 54.908

8.  Three-dimensional remodelling of the cellular energy distribution system during postnatal heart development.

Authors:  Yuho Kim; Peter T Ajayi; Christopher K E Bleck; Brian Glancy
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2022-10-03       Impact factor: 6.671

9.  A Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster.

Authors:  Zhihao Zheng; J Scott Lauritzen; Eric Perlman; Camenzind G Robinson; Matthew Nichols; Daniel Milkie; Omar Torrens; John Price; Corey B Fisher; Nadiya Sharifi; Steven A Calle-Schuler; Lucia Kmecova; Iqbal J Ali; Bill Karsh; Eric T Trautman; John A Bogovic; Philipp Hanslovsky; Gregory S X E Jefferis; Michael Kazhdan; Khaled Khairy; Stephan Saalfeld; Richard D Fetter; Davi D Bock
Journal:  Cell       Date:  2018-07-19       Impact factor: 41.582

10.  Learning and Segmenting Dense Voxel Embeddings for 3D Neuron Reconstruction.

Authors:  Kisuk Lee; Ran Lu; Kyle Luther; H Sebastian Seung
Journal:  IEEE Trans Med Imaging       Date:  2021-11-30       Impact factor: 10.048
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