Literature DB >> 28132896

Genetics and biochemistry remain essential in the structural era of the spliceosome.

Megan Mayerle1, Christine Guthrie2.   

Abstract

The spliceosome is not a single macromolecular machine. Rather it is a collection of dynamic heterogeneous subcomplexes that rapidly interconvert throughout the course of a typical splicing cycle. Because of this, for many years the only high resolution structures of the spliceosome available were of smaller, isolated protein or RNA components. Consequently much of our current understanding of the spliceosome derives from biochemical and genetic techniques. Now with the publication of multiple, high resolution structures of the spliceosome, some question the relevance of traditional biochemical and genetic techniques to the splicing field. We argue such techniques are not only relevant, but vital for an in depth mechanistic understanding of pre-mRNA splicing.
Copyright © 2017 Elsevier Inc. All rights reserved.

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Year:  2017        PMID: 28132896      PMCID: PMC5529278          DOI: 10.1016/j.ymeth.2017.01.006

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  117 in total

1.  A catalytically active group II intron domain 5 can function in the U12-dependent spliceosome.

Authors:  Girish C Shukla; Richard A Padgett
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

2.  Both catalytic steps of nuclear pre-mRNA splicing are reversible.

Authors:  Chi-Kang Tseng; Soo-Chen Cheng
Journal:  Science       Date:  2008-06-27       Impact factor: 47.728

3.  Prp8, the pivotal protein of the spliceosomal catalytic center, evolved from a retroelement-encoded reverse transcriptase.

Authors:  Mensur Dlakić; Arcady Mushegian
Journal:  RNA       Date:  2011-03-25       Impact factor: 4.942

Review 4.  Spliceosome structure and function.

Authors:  Cindy L Will; Reinhard Lührmann
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-07-01       Impact factor: 10.005

5.  The human U5-200kD DEXH-box protein unwinds U4/U6 RNA duplices in vitro.

Authors:  B Laggerbauer; T Achsel; R Lührmann
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-14       Impact factor: 11.205

6.  Molecular architecture of the human U4/U6.U5 tri-snRNP.

Authors:  Dmitry E Agafonov; Berthold Kastner; Olexandr Dybkov; Romina V Hofele; Wen-Ti Liu; Henning Urlaub; Reinhard Lührmann; Holger Stark
Journal:  Science       Date:  2016-02-18       Impact factor: 47.728

7.  Mutations in U6 snRNA that alter splice site specificity: implications for the active site.

Authors:  C F Lesser; C Guthrie
Journal:  Science       Date:  1993-12-24       Impact factor: 47.728

8.  U4/U5/U6 snRNP recognizes the 5' splice site in the absence of U2 snRNP.

Authors:  B B Konforti; M M Konarska
Journal:  Genes Dev       Date:  1994-08-15       Impact factor: 11.361

9.  Are snRNPs involved in splicing?

Authors:  M R Lerner; J A Boyle; S M Mount; S L Wolin; J A Steitz
Journal:  Nature       Date:  1980-01-10       Impact factor: 49.962

10.  Multiple domains of U1 snRNA, including U1 specific protein binding sites, are required for splicing.

Authors:  J Hamm; N A Dathan; D Scherly; I W Mattaj
Journal:  EMBO J       Date:  1990-04       Impact factor: 11.598

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  9 in total

1.  An Allosteric Network for Spliceosome Activation Revealed by High-Throughput Suppressor Analysis in Saccharomyces cerevisiae.

Authors:  David A Brow
Journal:  Genetics       Date:  2019-03-21       Impact factor: 4.562

2.  Global donor and acceptor splicing site kinetics in human cells.

Authors:  Leonhard Wachutka; Livia Caizzi; Julien Gagneur; Patrick Cramer
Journal:  Elife       Date:  2019-04-26       Impact factor: 8.140

3.  Structural and functional analyses of the spliceosome requires a multi-disciplinary approach.

Authors:  Melanie D Ohi
Journal:  Methods       Date:  2017-08-01       Impact factor: 3.608

4.  Transcript-specific determinants of pre-mRNA splicing revealed through in vivo kinetic analyses of the 1st and 2nd chemical steps.

Authors:  Michael A Gildea; Zachary W Dwyer; Jeffrey A Pleiss
Journal:  Mol Cell       Date:  2022-07-12       Impact factor: 19.328

5.  Saccharomyces cerevisiae Ecm2 Modulates the Catalytic Steps of pre-mRNA Splicing.

Authors:  Clarisse van der Feltz; Brandon Nikolai; Charles Schneider; Joshua C Paulson; Xingyang Fu; Aaron A Hoskins
Journal:  RNA       Date:  2021-02-05       Impact factor: 4.942

6.  A genetic screen in C. elegans reveals roles for KIN17 and PRCC in maintaining 5' splice site identity.

Authors:  Jessie M N G L Suzuki; Kenneth Osterhoudt; Catiana H Cartwright-Acar; Destiny R Gomez; Sol Katzman; Alan M Zahler
Journal:  PLoS Genet       Date:  2022-02-10       Impact factor: 6.020

Review 7.  Structural dynamics of the N-terminal domain and the Switch loop of Prp8 during spliceosome assembly and activation.

Authors:  Xu Jia; Chengfu Sun
Journal:  Nucleic Acids Res       Date:  2018-05-04       Impact factor: 16.971

8.  SNRP-27, the C. elegans homolog of the tri-snRNP 27K protein, has a role in 5' splice site positioning in the spliceosome.

Authors:  Alan M Zahler; Lucero E Rogel; Marissa L Glover; Samira Yitiz; J Matthew Ragle; Sol Katzman
Journal:  RNA       Date:  2018-07-13       Impact factor: 4.942

9.  Blocking late stages of splicing quickly limits pre-spliceosome assembly in vivo.

Authors:  Gonzalo I Mendoza-Ochoa; J David Barrass; Isabella E Maudlin; Jean D Beggs
Journal:  RNA Biol       Date:  2019-09-04       Impact factor: 4.652

  9 in total

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