Literature DB >> 28125358

Immunobiology of Long Noncoding RNAs.

Maninjay K Atianand1, Daniel R Caffrey1, Katherine A Fitzgerald1.   

Abstract

The discovery of long noncoding RNAs (lncRNA) has provided a new perspective on gene regulation in diverse biological contexts. lncRNAs are remarkably versatile molecules that interact with RNA, DNA, or proteins to promote or restrain the expression of protein-coding genes. Activation of immune cells is associated with dynamic changes in expression of genes, the products of which combat infectious microorganisms, initiate repair, and resolve inflammatory responses in cells and tissues. Recent evidence indicates that lncRNAs play important roles in directing the development of diverse immune cells and controlling the dynamic transcriptional programs that are a hallmark of immune cell activation. The importance of these molecules is underscored by their newly recognized roles in inflammatory diseases. In this review, we discuss the contribution of lncRNAs in the development and activation of immune cells and their roles in immune-related diseases. We also discuss challenges faced in identifying biological functions for this large and complex class of genes.

Entities:  

Keywords:  gene regulation; immunity; lincRNA; lncRNA; noncoding RNA

Mesh:

Substances:

Year:  2017        PMID: 28125358      PMCID: PMC6449690          DOI: 10.1146/annurev-immunol-041015-055459

Source DB:  PubMed          Journal:  Annu Rev Immunol        ISSN: 0732-0582            Impact factor:   28.527


  102 in total

Review 1.  Helper T cell diversity and plasticity.

Authors:  Shingo Nakayamada; Hayato Takahashi; Yuka Kanno; John J O'Shea
Journal:  Curr Opin Immunol       Date:  2012-02-15       Impact factor: 7.486

2.  A myelopoiesis-associated regulatory intergenic noncoding RNA transcript within the human HOXA cluster.

Authors:  Xueqing Zhang; Zheng Lian; Carolyn Padden; Mark B Gerstein; Joel Rozowsky; Michael Snyder; Thomas R Gingeras; Philipp Kapranov; Sherman M Weissman; Peter E Newburger
Journal:  Blood       Date:  2009-01-14       Impact factor: 22.113

3.  An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.

Authors:  Christine M Clemson; John N Hutchinson; Sergio A Sara; Alexander W Ensminger; Archa H Fox; Andrew Chess; Jeanne B Lawrence
Journal:  Mol Cell       Date:  2009-02-12       Impact factor: 17.970

4.  A long noncoding RNA associated with susceptibility to celiac disease.

Authors:  Ainara Castellanos-Rubio; Nora Fernandez-Jimenez; Radomir Kratchmarov; Xiaobing Luo; Govind Bhagat; Peter H R Green; Robert Schneider; Megerditch Kiledjian; Jose Ramon Bilbao; Sankar Ghosh
Journal:  Science       Date:  2016-04-01       Impact factor: 47.728

5.  A Long Noncoding RNA lincRNA-EPS Acts as a Transcriptional Brake to Restrain Inflammation.

Authors:  Maninjay K Atianand; Wenqian Hu; Ansuman T Satpathy; Ying Shen; Emiliano P Ricci; Juan R Alvarez-Dominguez; Ankit Bhatta; Stefan A Schattgen; Jason D McGowan; Juliana Blin; Joerg E Braun; Pallavi Gandhi; Melissa J Moore; Howard Y Chang; Harvey F Lodish; Daniel R Caffrey; Katherine A Fitzgerald
Journal:  Cell       Date:  2016-06-16       Impact factor: 41.582

6.  A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA.

Authors:  Marcella Cesana; Davide Cacchiarelli; Ivano Legnini; Tiziana Santini; Olga Sthandier; Mauro Chinappi; Anna Tramontano; Irene Bozzoni
Journal:  Cell       Date:  2011-10-14       Impact factor: 41.582

7.  p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes.

Authors:  Michal Krawczyk; Beverly M Emerson
Journal:  Elife       Date:  2014-04-29       Impact factor: 8.140

8.  The domain structure and distribution of Alu elements in long noncoding RNAs and mRNAs.

Authors:  Eugene Z Kim; Adam R Wespiser; Daniel R Caffrey
Journal:  RNA       Date:  2015-12-10       Impact factor: 4.942

9.  Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs.

Authors:  Aurélie Kapusta; Zev Kronenberg; Vincent J Lynch; Xiaoyu Zhuo; LeeAnn Ramsay; Guillaume Bourque; Mark Yandell; Cédric Feschotte
Journal:  PLoS Genet       Date:  2013-04-25       Impact factor: 5.917

10.  DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions.

Authors:  Wendy Huang; Benjamin Thomas; Ryan A Flynn; Samuel J Gavzy; Lin Wu; Sangwon V Kim; Jason A Hall; Emily R Miraldi; Charles P Ng; Frank Rigo; Frank W Rigo; Sarah Meadows; Nina R Montoya; Natalia G Herrera; Ana I Domingos; Fraydoon Rastinejad; Richard M Myers; Frances V Fuller-Pace; Richard Bonneau; Howard Y Chang; Oreste Acuto; Dan R Littman
Journal:  Nature       Date:  2015-12-16       Impact factor: 49.962

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  169 in total

Review 1.  Long noncoding RNAs and the regulation of innate immunity and host-virus interactions.

Authors:  Megha Basavappa; Sara Cherry; Jorge Henao-Mejia
Journal:  J Leukoc Biol       Date:  2019-02-28       Impact factor: 4.962

2.  Long noncoding RNA Malat1 is not essential for T cell development and response to LCMV infection.

Authors:  Yingpeng Yao; Wenhui Guo; Jingjing Chen; Pingting Guo; Guotao Yu; Juanjuan Liu; Fang Wang; Jingjing Liu; Menghao You; Tianyan Zhao; Youmin Kang; Xi Ma; Shuyang Yu
Journal:  RNA Biol       Date:  2018-12-04       Impact factor: 4.652

3.  Long Noncoding RNA Signatures Induced by Toll-Like Receptor 7 and Type I Interferon Signaling in Activated Human Plasmacytoid Dendritic Cells.

Authors:  Rochelle C Joslyn; Adriana Forero; Richard Green; Stephen E Parker; Ram Savan
Journal:  J Interferon Cytokine Res       Date:  2018-09       Impact factor: 2.607

4.  CRISPR-based technology to silence the expression of IncRNAs.

Authors:  James D Phelan; Louis M Staudt
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-03       Impact factor: 11.205

5.  DAMP-driven metabolic adaptation.

Authors:  Kirsty Minton
Journal:  Nat Rev Immunol       Date:  2020-01       Impact factor: 53.106

6.  LncRNA Malat1 inhibition of TDP43 cleavage suppresses IRF3-initiated antiviral innate immunity.

Authors:  Wei Liu; Ziqiao Wang; Lun Liu; Zongheng Yang; Shuo Liu; Zhongfei Ma; Yin Liu; Yuanwu Ma; Lianfeng Zhang; Xuan Zhang; Minghong Jiang; Xuetao Cao
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-09       Impact factor: 11.205

Review 7.  Long non-coding RNAs in immune regulation and their potential as therapeutic targets.

Authors:  Dinesh Babu Uthaya Kumar; Adam Williams
Journal:  Int Immunopharmacol       Date:  2020-02-12       Impact factor: 4.932

Review 8.  Long Noncoding RNAs in Host-Pathogen Interactions.

Authors:  Federica Agliano; Vijay A Rathinam; Andrei E Medvedev; Sivapriya Kailasan Vanaja; Anthony T Vella
Journal:  Trends Immunol       Date:  2019-04-30       Impact factor: 16.687

Review 9.  Long non-coding RNAs regulating macrophage functions in homeostasis and disease.

Authors:  Kaitlyn R Scacalossi; Coen van Solingen; Kathryn J Moore
Journal:  Vascul Pharmacol       Date:  2018-03-13       Impact factor: 5.773

10.  The Magnitude of IFN-γ Responses Is Fine-Tuned by DNA Architecture and the Non-coding Transcript of Ifng-as1.

Authors:  Franziska Petermann; Aleksandra Pękowska; Catrina A Johnson; Dragana Jankovic; Han-Yu Shih; Kan Jiang; William H Hudson; Stephen R Brooks; Hong-Wei Sun; Alejandro V Villarino; Chen Yao; Kentner Singleton; Rama S Akondy; Yuka Kanno; Alan Sher; Rafael Casellas; Rafi Ahmed; John J O'Shea
Journal:  Mol Cell       Date:  2019-07-31       Impact factor: 17.970

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