| Literature DB >> 28122029 |
Seung Chul Shin1, In Hye Ahn1,2, Do Hwan Ahn1, Yung Mi Lee1, Jungeun Lee1, Jun Hyuck Lee1,2, Han-Woo Kim1,2, Hyun Park1,2.
Abstract
We identified two antimicrobial peptides (AMPs) with similarity to moronecidin in Antarctic fishes. The characteristics of both AMPs were determined using moronecidin as a control. Moronecidin, which was first isolated from hybrid striped bass, is highly salt-resistant, and possesses broad-spectrum activity against various microbes. The moronecidin-like peptide from Notothenia coriiceps exhibited a narrower spectrum of activity and a higher salt sensitivity than moronecidin. The AMP from Parachaenichthys charcoti exhibited similar antimicrobial activity to moronecidin, and similar salt sensitivity. In an experiment to identify toxic effects, both of the moronecidin-like peptides from the Antarctic fishes exhibited lower hemolytic activity than moronecidin. In spite of its low toxicity, the AMP from N. coriiceps is unlikely to be considered as a candidate for antibiotic development, owing to its narrow spectrum of activity and high salt sensitivity. In contrast, the high salt resistance and broad-spectrum activity of the AMP from P. charcoti could be more advantageous for clinical use than moronecidin, since it could kill bacteria under physiological conditions with low toxicity. A further comparison of these two AMPs from Antarctic fishes with other AMPs could help to reduce the toxicity of AMPs for clinical use.Entities:
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Year: 2017 PMID: 28122029 PMCID: PMC5266299 DOI: 10.1371/journal.pone.0170821
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Synthetic peptides.
| Name | Sequence | Abbreviation | Net charge at pH 7 | pI | Calculated MW (measured MW) |
|---|---|---|---|---|---|
| moro-NH2 | 4.4 | 14 | 2543.0 (2542.4) | ||
| moroNC-NH2 | 2.4 | 11.39 | 2486.9 (2486.2) | ||
| moroPC-NH2 | 3.3 | 14 | 2418.8 (2418.0) |
Microbial strains and culture conditions.
| Name | Microbial type | Culture broth | Growth temperature (°C) |
|---|---|---|---|
| Gram-negative bacterium | Tryptic soy broth | 30 | |
| Gram-negative bacterium | Nutrient broth | 30 | |
| Gram-negative bacterium | Nutrient broth | 30 | |
| Gram-negative bacterium | Nutrient broth | 30 | |
| Gram-negative bacterium | Nutrient broth | 25 | |
| Gram-negative bacterium | Nutrient broth | 25 | |
| Gram-negative bacterium | Nutrient broth | 30 | |
| Gram-negative bacterium | Nutrient broth | 15 | |
| Gram-negative bacterium | Nutrient broth | 15 | |
| Gram-positive bacterium | Tryptic soy broth | 30 | |
| Gram-positive bacterium | Tryptic soy broth | 30 | |
| Gram-positive bacterium | Nutrient broth | 30 | |
| Gram-positive bacterium | Nutrient broth | 30 | |
| Filamentous fungus | Nutrient broth | 30 | |
| Yeast | Nutrient broth | 30 | |
| Yeast | Nutrient broth | 30 |
Fig 1Alignment of the two novel moronecidin-like peptides with other known piscine AMPs.
The signal peptides and mature peptides of AMPs are well conserved in fish species. Accession number: dicentracin (European seabass, Dicentrarchus labrax) AAP58960.1; moronecidin (Nile tilapia, Oreochromis niloticus) XP_003456662; dicentracin (Sablefish, Anoplopoma fimbria) ACQ58110.1; moronecidin (Mandarin fish, Siniperca chuatsi) AAV65044.1; moronecidin (Nile tilapia, Oreochromis niloticus) XP_003456661.1; moronecidin (Sablefish, Anoplopoma fimbria) ACQ57928.1; moronecidin (Striped seabass, Morone saxatilis) Q8UUG0; moronecidin (White bass, Morone chrysops) Q8UUG2.1; piscidin (Brown-marbled grouper, Epinephelus fuscoguttatus) ADE06665.1; piscidin (Duskytail grouper, Epinephelus bleekeri) ADY86110.1; piscidin (Hong Kong grouper, Epinephelus akaara) ACE78290.1; piscidin (Hybrid striped seabass, Morone chrysops × Morone saxatilis) ADP37959.1; piscidin (Hybrid striped seabass, Morone chrysops × Morone saxatilis) ADP37960.1; piscidin (Large yellow croaker, Larimichthys crocea) ACE78289.1; piscidin (Longtooth grouper, Epinephelus bruneus) AEM37732.1; piscidin (Malabar grouper, Epinephelus malabaricus) ADY86112.1; piscidin (Orange-spotted grouper, Epinephelus coioides) AFM37317.1; moronecidin (Antarctic black rockcod, Notothenia coriiceps) XP_010768425.1; moronecidin (Antarctic dragonfish, Parachaenichthys charcoti) KX344030; pleurocidin (Pleuronectes americanus) AAF17252.1; piscidin (Icefish, Chionodraco hamatus) CBX55949.1; piscidin (Atlantic cod, Gadus morhua) ACS91329.1.
Fig 2Phylogenetic tree showing the relationship between the two moronecidin-like peptides from Antarctic fishes and other known AMPs.
The accession number of each AMP is the same as that given in Fig 1. The phylogenetic tree was constructed by the neighbor-joining method using the bootstrap test with 2000 replicates. The scale bar denotes a 0.1 change per amino acid position.
Fig 3Helical wheel diagram depicting amphipathic alpha-helical conformations of (a) moro (b) moroNC, and (c) moroPC. Hydrophobic residues are yellow, positively charged residues are blue, and negatively charged residues are red. Particular polar residues are violet (threonine and serine), pink (asparagine and glutamine) or sky blue (histidine). The arrows represent the helical hydrophobic moment.
Antimicrobial spectrum of synthetic, amidated moronecidin-like peptides from Antarctic fishes.
| AMP (μM) | |||
|---|---|---|---|
| moro-NH2 | moroNC-NH2 | moroPC-NH2 | |
| 50 | >50 | >50 | |
| >50 | >50 | >50 | |
| 25 | >50 | 25 | |
| 5 | 12.5 | 5 | |
| 2.5 | 5 | 2.5 | |
| 5 | 12.5 | 5 | |
| 5 | >50 | 25 | |
| 2.5 | 25 | 2.5 | |
| 2.5 | 25 | 5 | |
| 2.5 | 12.5 | 5 | |
| >50 | >50 | >50 | |
| 5 | 5 | 5 | |
Effect of temperature on AMP activity against Psychrobacter sp. PAMC 25501.
| AMP (μM) | |||
|---|---|---|---|
| moro-NH2 | moroNC-NH2 | moroPC-NH2 | |
| 2.5 | 2.5 | ||
| 2.5 | 2.5 | ||
| 2.5 | 2.5 | ||
Effect of temperature on AMP activity against E. coli DH5α.
| AMP (μM) | |||
|---|---|---|---|
| moro-NH2 | moroNC-NH2 | moroPC-NH2 | |
| 5 | 12.5 | 5 | |
| 5 | 12.5 | 5 | |
| 5 | 12.5 | 5 | |
| 5 | 12.5 | 5 | |
AMP activity against Psychrobacter sp. PAMC 25501, Flavobacteria sp. PAMC 22217, and Lacinutrix algicola AKS293T.
| AMP (μM) | |||
|---|---|---|---|
| moro-NH2 | moroNC-NH2 | moroPC-NH2 | |
| 1.25 | 2.5 | 1.25 | |
| 1.25 | 2.5 | 1.25 | |
| 2.5 | 5 | 1.5 | |
| 1.25 | 12.5 | 1.25 | |
Effects of monovalent and divalent cations on AMP activity against Psychrobacter sp. PAMC 25501.
| Moronecidin (μM) | |||
|---|---|---|---|
| moro-NH2 | moroNC-NH2 | moroPC-NH2 | |
| 2.5 | 5 | 2.5 | |
| 2.5 | 2.5 | ||
| 2.5 | 2.5 | ||
| 2.5–5 | 2.5–5 | ||
| 5 | 5 | ||
| 25 | 2.5 | ||
| >50 | 12.5 | ||
| >50 | 12.5 | ||
| >50 | >50 | >50 | |
| >50 | >50 | >50 | |
| 5 | 2.5 | ||
| 5 | |||
| 12.5 | |||
| 50 | 50 | ||
| 50 | >50 | ||
Fig 4Hemolytic activities of moro-NH2, moroNC-NH2, and moroPC-NH2.
The percentage of hemolysis was defined as the ratio of absorbance between the sample and an erythrocyte suspension treated with 0.1% SDS.