Literature DB >> 22493207

Genome sequence of a novel member of the genus Psychrobacter isolated from Antarctic soil.

Su Jin Kim1, Seung Chul Shin, Soon Gyu Hong, Yung Mi Lee, In-Geol Choi, Hyun Park.   

Abstract

Psychrobacter spp. have shown characteristics indicating remarkable capabilities at subzero temperatures that identify them as potential model organisms for the study of low-temperature adaptations. Here we present the draft genome sequence of Psychrobacter sp. PAMC 21119, which was isolated from permafrost soil of Antarctica; this information could provide insight into adaptation and evolution strategies under extreme environmental conditions.

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Year:  2012        PMID： 22493207      PMCID： PMC3347060          DOI： 10.1128/JB.00234-12

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  7 in total

1.  Low-temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments.

Authors:  T Vishnivetskaya; S Kathariou; J McGrath; D Gilichinsky; J M Tiedje
Journal:  Extremophiles       Date:  2000-06       Impact factor: 2.395

2.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  A whole-genome assembly of Drosophila.

Authors:  E W Myers; G G Sutton; A L Delcher; I M Dew; D P Fasulo; M J Flanigan; S A Kravitz; C M Mobarry; K H Reinert; K A Remington; E L Anson; R A Bolanos; H H Chou; C M Jordan; A L Halpern; S Lonardi; E M Beasley; R C Brandon; L Chen; P J Dunn; Z Lai; Y Liang; D R Nusskern; M Zhan; Q Zhang; X Zheng; G M Rubin; M D Adams; J C Venter
Journal:  Science       Date:  2000-03-24       Impact factor: 47.728

4.  Phylogenetic analysis of psychrophilic bacteria isolated from the Japan Trench, including a description of the deep-sea species Psychrobacter pacificensis sp. nov.

Authors:  A Maruyama; D Honda; H Yamamoto; K Kitamura; T Higashihara
Journal:  Int J Syst Evol Microbiol       Date:  2000-03       Impact factor: 2.747

5.  The COG database: new developments in phylogenetic classification of proteins from complete genomes.

Authors:  R L Tatusov; D A Natale; I V Garkavtsev; T A Tatusova; U T Shankavaram; B S Rao; B Kiryutin; M Y Galperin; N D Fedorova; E V Koonin
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

6.  Psychrobacter submarinus sp. nov. and Psychrobacter marincola sp. nov., psychrophilic halophiles from marine environments.

Authors:  Lyudmila A Romanenko; Peter Schumann; Manfred Rohde; Anatoly M Lysenko; Valery V Mikhailov; Erko Stackebrandt
Journal:  Int J Syst Evol Microbiol       Date:  2002-07       Impact factor: 2.747

7.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  7 in total
  5 in total

1.  Comparative genomics analysis of five Psychrobacter strains isolated from world-wide habitats reveal high intra-genus variations.

Authors:  Shan Zhang; Weizhi Song; Min Yu; Xuezheng Lin
Journal:  Extremophiles       Date:  2017-03-17       Impact factor: 2.395

2.  Biochemical, Molecular, and Transcriptional Highlights of the Biosynthesis of an Effective Biosurfactant Produced by Bacillus safensis PHA3, a Petroleum-Dwelling Bacteria.

Authors:  Abdulsamie Hanano; Mouhnad Shaban; Ibrahem Almousally
Journal:  Front Microbiol       Date:  2017-01-25       Impact factor: 5.640

3.  Characterization of Two Antimicrobial Peptides from Antarctic Fishes (Notothenia coriiceps and Parachaenichthys charcoti).

Authors:  Seung Chul Shin; In Hye Ahn; Do Hwan Ahn; Yung Mi Lee; Jungeun Lee; Jun Hyuck Lee; Han-Woo Kim; Hyun Park
Journal:  PLoS One       Date:  2017-01-25       Impact factor: 3.240

4.  The subway microbiome: seasonal dynamics and direct comparison of air and surface bacterial communities.

Authors:  Jostein Gohli; Kari Oline Bøifot; Line Victoria Moen; Paulina Pastuszek; Gunnar Skogan; Klas I Udekwu; Marius Dybwad
Journal:  Microbiome       Date:  2019-12-19       Impact factor: 14.650

5.  Draft genome sequence of Psychrobacter sp. ENNN9_III, a strain isolated from water in a polluted temperate estuarine system (Ria de Aveiro, Portugal).

Authors:  Jaqueline Conceição Meireles Gomes; Juliana Simão Nina de Azevedo; Adonney Allan de Oliveira Veras; Jorianne Thyeska Castro Alves; Isabel Henriques; António Correia; Artur Luiz da Costa da Silva; Adriana Ribeiro Carneiro
Journal:  Genom Data       Date:  2016-02-23
  5 in total

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