Literature DB >> 28118223

RNA splicing during terminal erythropoiesis.

John G Conboy1.   

Abstract

PURPOSE OF REVIEW: Erythroid progenitors must accurately and efficiently splice thousands of pre-mRNAs as the cells undergo extensive changes in gene expression and cellular remodeling during terminal erythropoiesis. Alternative splicing choices are governed by interactions between RNA binding proteins and cis-regulatory binding motifs in the RNA. This review will focus on recent studies that define the genome-wide scope of splicing in erythroblasts and discuss what is known about its regulation. RECENT
FINDINGS: RNA-seq analysis of highly purified erythroblast populations has revealed an extensive program of alternative splicing of both exons and introns. During normal erythropoiesis, stage-specific splicing transitions alter the structure and abundance of protein isoforms required for optimized red cell production. Mutation or deficiency of splicing regulators underlies hematopoietic disease in myelopdysplasia syndrome patients via disrupting the splicing program.
SUMMARY: Erythroid progenitors execute an elaborate alternative splicing program that modulates gene expression posttranscriptionally, ultimately regulating the structure and function of the proteome in a differentiation stage-specific manner during terminal erythropoiesis. This program helps drive differentiation and ensure synthesis of the proper protein isoforms required to produce mechanically stable red cells. Mutation or deficiency of key splicing regulatory proteins disrupts the splicing program to cause disease.

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Year:  2017        PMID: 28118223      PMCID: PMC5636188          DOI: 10.1097/MOH.0000000000000329

Source DB:  PubMed          Journal:  Curr Opin Hematol        ISSN: 1065-6251            Impact factor:   3.284


  66 in total

1.  Four highly stable eukaryotic mRNAs assemble 3' untranslated region RNA-protein complexes sharing cis and trans components.

Authors:  M Holcik; S A Liebhaber
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-18       Impact factor: 11.205

2.  Developmental transcriptome analysis of human erythropoiesis.

Authors:  Lihong Shi; Yu-Hsuan Lin; M C Sierant; Fan Zhu; Shuaiying Cui; Yuanfang Guan; Maureen A Sartor; Osamu Tanabe; Kim-Chew Lim; James Douglas Engel
Journal:  Hum Mol Genet       Date:  2014-04-29       Impact factor: 6.150

3.  Muscleblind-like 1 (Mbnl1) regulates pre-mRNA alternative splicing during terminal erythropoiesis.

Authors:  Albert W Cheng; Jiahai Shi; Piu Wong; Katherine L Luo; Paula Trepman; Eric T Wang; Heejo Choi; Christopher B Burge; Harvey F Lodish
Journal:  Blood       Date:  2014-05-28       Impact factor: 22.113

4.  Beta spectrin in human skeletal muscle. Tissue-specific differential processing of 3' beta spectrin pre-mRNA generates a beta spectrin isoform with a unique carboxyl terminus.

Authors:  J C Winkelmann; F F Costa; B L Linzie; B G Forget
Journal:  J Biol Chem       Date:  1990-11-25       Impact factor: 5.157

5.  Organization of the human protein 4.1 genomic locus: new insights into the tissue-specific alternative splicing of the pre-mRNA.

Authors:  F Baklouti; S C Huang; T J Vulliamy; J Delaunay; E J Benz
Journal:  Genomics       Date:  1997-02-01       Impact factor: 5.736

6.  Transcriptome-wide regulation of pre-mRNA splicing and mRNA localization by muscleblind proteins.

Authors:  Eric T Wang; Neal A L Cody; Sonali Jog; Michela Biancolella; Thomas T Wang; Daniel J Treacy; Shujun Luo; Gary P Schroth; David E Housman; Sita Reddy; Eric Lécuyer; Christopher B Burge
Journal:  Cell       Date:  2012-08-17       Impact factor: 41.582

7.  Anion exchanger 1 in human kidney and oncocytoma differs from erythroid AE1 in its NH2 terminus.

Authors:  A Kollert-Jöns; S Wagner; S Hübner; H Appelhans; D Drenckhahn
Journal:  Am J Physiol       Date:  1993-12

8.  Cancer-Associated SF3B1 Hotspot Mutations Induce Cryptic 3' Splice Site Selection through Use of a Different Branch Point.

Authors:  Rachel B Darman; Michael Seiler; Anant A Agrawal; Kian H Lim; Shouyong Peng; Daniel Aird; Suzanna L Bailey; Erica B Bhavsar; Betty Chan; Simona Colla; Laura Corson; Jacob Feala; Peter Fekkes; Kana Ichikawa; Gregg F Keaney; Linda Lee; Pavan Kumar; Kaiko Kunii; Crystal MacKenzie; Mark Matijevic; Yoshiharu Mizui; Khin Myint; Eun Sun Park; Xiaoling Puyang; Anand Selvaraj; Michael P Thomas; Jennifer Tsai; John Y Wang; Markus Warmuth; Hui Yang; Ping Zhu; Guillermo Garcia-Manero; Richard R Furman; Lihua Yu; Peter G Smith; Silvia Buonamici
Journal:  Cell Rep       Date:  2015-10-22       Impact factor: 9.423

9.  U2AF1 mutations alter splice site recognition in hematological malignancies.

Authors:  Janine O Ilagan; Aravind Ramakrishnan; Brian Hayes; Michele E Murphy; Ahmad S Zebari; Philip Bradley; Robert K Bradley
Journal:  Genome Res       Date:  2014-09-29       Impact factor: 9.043

10.  The RNA binding protein RBM38 (RNPC1) regulates splicing during late erythroid differentiation.

Authors:  Laurie A Heinicke; Behnam Nabet; Shihao Shen; Peng Jiang; Sebastiaan van Zalen; Benjamin Cieply; J Eric Russell; Yi Xing; Russ P Carstens
Journal:  PLoS One       Date:  2013-10-18       Impact factor: 3.240

View more
  5 in total

1.  α-Globin pre-mRNA splicing, revisited.

Authors:  John G Conboy
Journal:  Blood       Date:  2019-05-23       Impact factor: 22.113

Review 2.  Alternative splicing as a regulator of development and tissue identity.

Authors:  Francisco E Baralle; Jimena Giudice
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-10       Impact factor: 94.444

3.  Aberrant splicing contributes to severe α-spectrin-linked congenital hemolytic anemia.

Authors:  Patrick G Gallagher; Yelena Maksimova; Kimberly Lezon-Geyda; Peter E Newburger; Desiree Medeiros; Robin D Hanson; Jennifer Rothman; Sara Israels; Donna A Wall; Robert F Sidonio; Colin Sieff; L Kate Gowans; Nupur Mittal; Roland Rivera-Santiago; David W Speicher; Susan J Baserga; Vincent P Schulz
Journal:  J Clin Invest       Date:  2019-04-30       Impact factor: 14.808

Review 4.  Blood Relatives: Splicing Mechanisms underlying Erythropoiesis in Health and Disease.

Authors:  Kirsten A Reimer; Karla M Neugebauer
Journal:  F1000Res       Date:  2018-08-30

5.  Dynamic changes in RNA-protein interactions and RNA secondary structure in mammalian erythropoiesis.

Authors:  Mengge Shan; Xinjun Ji; Kevin Janssen; Ian M Silverman; Jesse Humenik; Ben A Garcia; Stephen A Liebhaber; Brian D Gregory
Journal:  Life Sci Alliance       Date:  2021-07-27
  5 in total

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