Literature DB >> 28117091

Metabolizing Data in the Cloud.

Benedikt Warth1, Nadine Levin1, Duane Rinehart1, John Teijaro1, H Paul Benton1, Gary Siuzdak2.   

Abstract

Cloud-based bioinformatic platforms address the fundamental demands of creating a flexible scientific environment, facilitating data processing and general accessibility independent of a countries' affluence. These platforms have a multitude of advantages as demonstrated by omics technologies, helping to support both government and scientific mandates of a more open environment.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Mesh：

Year:  2017        PMID： 28117091      PMCID： PMC8889625          DOI： 10.1016/j.tibtech.2016.12.010

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN： 0167-7799            Impact factor:   19.536


  13 in total

1.  XCMS Online: a web-based platform to process untargeted metabolomic data.

Authors:  Ralf Tautenhahn; Gary J Patti; Duane Rinehart; Gary Siuzdak
Journal:  Anal Chem       Date:  2012-05-10       Impact factor: 6.986

2.  Biology: The big challenges of big data.

Authors:  Vivien Marx
Journal:  Nature       Date:  2013-06-13       Impact factor: 49.962

3.  Interactive and scalable biology cloud experimentation for scientific inquiry and education.

Authors:  Zahid Hossain; Engin W Bumbacher; Alice M Chung; Honesty Kim; Casey Litton; Ashley D Walter; Sachin N Pradhan; Kemi Jona; Paulo Blikstein; Ingmar H Riedel-Kruse
Journal:  Nat Biotechnol       Date:  2016-12-07       Impact factor: 54.908

4.  Secure cloud computing for genomic data.

Authors:  Somalee Datta; Keith Bettinger; Michael Snyder
Journal:  Nat Biotechnol       Date:  2016-06-09       Impact factor: 54.908

Review 5.  Computational solutions to large-scale data management and analysis.

Authors:  Eric E Schadt; Michael D Linderman; Jon Sorenson; Lawrence Lee; Garry P Nolan
Journal:  Nat Rev Genet       Date:  2010-09       Impact factor: 53.242

6.  An accelerated workflow for untargeted metabolomics using the METLIN database.

Authors:  Ralf Tautenhahn; Kevin Cho; Winnie Uritboonthai; Zhengjiang Zhu; Gary J Patti; Gary Siuzdak
Journal:  Nat Biotechnol       Date:  2012-09       Impact factor: 54.908

7.  Metabolomic data streaming for biology-dependent data acquisition.

Authors:  Duane Rinehart; Caroline H Johnson; Thomas Nguyen; Julijana Ivanisevic; H Paul Benton; Jessica Lloyd; Adam P Arkin; Adam M Deutschbauer; Gary J Patti; Gary Siuzdak
Journal:  Nat Biotechnol       Date:  2014-06       Impact factor: 54.908

8.  MetaboAnalyst 3.0--making metabolomics more meaningful.

Authors:  Jianguo Xia; Igor V Sinelnikov; Beomsoo Han; David S Wishart
Journal:  Nucleic Acids Res       Date:  2015-04-20       Impact factor: 16.971

9.  Data Streaming for Metabolomics: Accelerating Data Processing and Analysis from Days to Minutes.

Authors:  J Rafael Montenegro-Burke; Aries E Aisporna; H Paul Benton; Duane Rinehart; Mingliang Fang; Tao Huan; Benedikt Warth; Erica Forsberg; Brian T Abe; Julijana Ivanisevic; Dennis W Wolan; Luc Teyton; Luke Lairson; Gary Siuzdak
Journal:  Anal Chem       Date:  2017-01-03       Impact factor: 6.986

10.  How Does One "Open" Science? Questions of Value in Biological Research.

Authors:  Nadine Levin; Sabina Leonelli
Journal:  Sci Technol Human Values       Date:  2016-10-04
View more
  5 in total

Review 1.  Assessing health risks from multiple environmental stressors: Moving from G×E to I×E.

Authors:  Cliona M McHale; Gwendolyn Osborne; Rachel Morello-Frosch; Andrew G Salmon; Martha S Sandy; Gina Solomon; Luoping Zhang; Martyn T Smith; Lauren Zeise
Journal:  Mutat Res Rev Mutat Res       Date:  2017-11-24       Impact factor: 5.657

2.  Metabolomics Reveals that Dietary Xenoestrogens Alter Cellular Metabolism Induced by Palbociclib/Letrozole Combination Cancer Therapy.

Authors:  Benedikt Warth; Philipp Raffeiner; Ana Granados; Tao Huan; Mingliang Fang; Erica M Forsberg; H Paul Benton; Laura Goetz; Caroline H Johnson; Gary Siuzdak
Journal:  Cell Chem Biol       Date:  2018-01-11       Impact factor: 8.116

3.  Interoperable and scalable data analysis with microservices: applications in metabolomics.

Authors:  Payam Emami Khoonsari; Pablo Moreno; Sven Bergmann; Joachim Burman; Marco Capuccini; Matteo Carone; Marta Cascante; Pedro de Atauri; Carles Foguet; Alejandra N Gonzalez-Beltran; Thomas Hankemeier; Kenneth Haug; Sijin He; Stephanie Herman; David Johnson; Namrata Kale; Anders Larsson; Steffen Neumann; Kristian Peters; Luca Pireddu; Philippe Rocca-Serra; Pierrick Roger; Rico Rueedi; Christoph Ruttkies; Noureddin Sadawi; Reza M Salek; Susanna-Assunta Sansone; Daniel Schober; Vitaly Selivanov; Etienne A Thévenot; Michael van Vliet; Gianluigi Zanetti; Christoph Steinbeck; Kim Kultima; Ola Spjuth
Journal:  Bioinformatics       Date:  2019-10-01       Impact factor: 6.937

4.  Laniakea: an open solution to provide Galaxy "on-demand" instances over heterogeneous cloud infrastructures.

Authors:  Marco Antonio Tangaro; Giacinto Donvito; Marica Antonacci; Matteo Chiara; Pietro Mandreoli; Graziano Pesole; Federico Zambelli
Journal:  Gigascience       Date:  2020-04-01       Impact factor: 6.524

5.  Metabolomics Profiles of Smokers from Two Ethnic Groups with Differing Lung Cancer Risk.

Authors:  Romel Dator; Peter W Villalta; Nicole Thomson; Joni Jensen; Dorothy K Hatsukami; Irina Stepanov; Benedikt Warth; Silvia Balbo
Journal:  Chem Res Toxicol       Date:  2020-05-11       Impact factor: 3.739
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.