| Literature DB >> 28115985 |
Celia M Limia1, Yudira Soto1, Yanara García2, Orestes Blanco1, Vivian Kourí1, María V López2, María E Toledo1, Lissette Pérez1, Yoanna Baños1, Yaniris Caturla1, Francisco Aguayo3.
Abstract
BACKGROUND: An association between HPV infection and progression to anal squamous intraepithelial lesions (ASIL) has been established, specifically in high-risk populations such as HIV-infected men. In this population, anal cancer is one of the most common non-AIDS-defining malignancies.Entities:
Keywords: Anal cancer; Anal squamous intraepithelial lesions; HIV; HPV
Year: 2017 PMID: 28115985 PMCID: PMC5240437 DOI: 10.1186/s13027-017-0118-9
Source DB: PubMed Journal: Infect Agent Cancer ISSN: 1750-9378 Impact factor: 2.965
Primer and probes for real time polymerase chain reaction
| LCR/E6/E7 regions primers and TaqMan probes | Sequences 5′- 3′ |
|---|---|
| HPV 16 + | 5′ gaa ccg aaa ccg gtt agt ata a 3′ |
| HPV 16 - | 5′ atg tat agt tgt ttg cag ctc tgt 3′ |
| HPV 16 Probe | 5′ cat ttt atg cac caa aag aga act gca atg ttt c 3′ |
| HPV 18 + | 5′ gga ccg aaa acg gtg tat ata a 3′ |
| HPV 18 - | 5′ cag tga agt gtt cag ttc ggt 3′ |
| HPV 18 Probe | 5′ atg tga gaa aca cac cac aat act atg gcg cg 3′ |
| HPV 31 + | 5′ gaa ccg aaa acg gtt ggt ata ta 3′ |
| HPV 31 - | 5′ atc gta ggg tat ttc caa tgc 3′ |
| HPV 31 Probe | 5′ cat agt att ttg tgc aaa cct aca gac gcc atg t 3′ |
| HPV 33 + | 5′ gca tga ttt gtg cca agc at 3′ |
| HPV 33 - | 5′ ctc aga tcg ttg caa agg ttt 3′ |
| HPV 33 Probe | 5′ act ata cac aac att gaa cta cag tgc gtg gaa tgc 3′ |
| HPV 45 + | 5′ cag tgt aat aca tgt tgt gac cag 3′ |
| HPV 45 - | 5′ aca gga tct aat tca ttc tga ggt 3′ |
| HPV 45 Probe | 5′ caa gaa aga ctt cgc aga cgt agg gaa aca c 3′ |
| HPV 58 + | 5′ cac gga cat tgc atg att tgt 3′ |
| HPV 58 - | 5′ tca gat cgc tgc aaa gtc ttt 3′ |
| HPV 58 Probe | 5′ ttt caa ttc gat ttc atg cac 3′ |
| β globin + | 5′ aca caa ctg tgt tca cta gc 3′ |
| β globin - | 5′ caa ctt cat cca cgt tca cc 3′ |
| β globin Probe | 5′ tca aac aga cac cat ggt gca tct gac tcc 3′ |
Relationship between anal HPV infection and socio-demographic, epidemiologic and clinical risk factors in the studied population
| Variables |
| HPV-positive | HPV-negative |
| OR (CI 95%) | |
|---|---|---|---|---|---|---|
| Total | 56 (100) | 50 (89) | 6 (11) | |||
| Age, median | 35 | _ | _ | |||
| Age (years) | 0.862 | |||||
| 20–29 | 22 (39) | 20 (40) | 2 (33) | 2.50 (0.30–20.92) | ||
| 30–39 | 11 (20) | 11 (22) | 0 (0) | --- | ||
| 40–49 | 13 (23) | 11 (22) | 2 (33) | 1.38 (0.16–11.94) | ||
| ≥50 | 10 (18) | 8 (16) | 2 (33) | 1 (Reference) | ||
| Education | 0.766 | |||||
| Primary and junior high school | 15 (27) | 14 (28) | 1 (17) | 2.55 (0.20–31.86) | ||
| High School | 28 (50) | 25 (50) | 3 (50) | 1.52 (0.22–10.38) | ||
| University | 13 (23) | 11 (22) | 2 (33) | 1 (Reference) | ||
| Marriage status | 0.999 | |||||
| Married | 9 (16) | 8 (16) | 1 (17) | 1 (Reference) | ||
| Unmarried | 43 (77) | 38 (76) | 5 (83) | 0.95 (0.10–9.27) | ||
| Divorced | 4 (7) | 4 (8) | 0 (0) | --- | ||
| Self-reported sexual orientation | 0.084 | |||||
| MSM | 50 (89) | 46 (92) | 4 (67) | 5.75 (0.79–41.69) | ||
| Heterosexual | 6 (11) | 4 (8) | 2 (33) | 1 (Reference) | ||
| Alcohol consumption | 0.196 | |||||
| Yes | 23 (41) | 19 (38) | 4 (67) | 0.31 (0.05–1.84) | ||
| No | 33 (59) | 31(62) | 2 (33) | 1 (Reference) | ||
| Smoking | 0.229 | |||||
| Yes | 24 (43) | 20 (40) | 4 (67) | 0.33 (0.6–2.00) | ||
| No | 32 (57) | 30 (60) | 2 (33) | 1 (Reference) | ||
| CD4+ T cells count | 0.465 | |||||
| <200 | 17 (30) | 16 (32) | 1 (17) | 4.57 (0.35–59.11) | ||
| 200–500 | 30 (54) | 27 (54) | 3 (50) | 2.57 (0.36–18.49) | ||
| >500 | 9 (16) | 7 (14) | 2 (33) | 1 (Reference) | ||
| Age of first sexual intercourse (years) | 0.362 | |||||
| <15 | 19 (34) | 18 (36) | 1 (17) | 2.81 (0.30–25.98) | ||
| ≥15 | 37 (66) | 32 (64) | 5 (83) | 1 (Reference) | ||
| Sexual practice | 0.492 | |||||
| Genital | 5 (9) | 4 (8) | 1 (17) | 1 (Reference) | ||
| Oral/Genital | 51 (91) | 46 (92) | 5 (83) | 2.30 (0.21–24.80) | ||
| Anal receptive sex |
| |||||
| Yes | 47 (84) | 45 (90) | 3 (50) |
| ||
| No | 9 (16) | 5 (10) | 3 (50) | 1 (Reference) | ||
| Number of sexual partners during the last two years. | 0.756 | |||||
| 1 | 19 (34) | 16 (32) | 3 (50) | 1 (Reference) | ||
| 2–4 | 18 (32) | 17 (34) | 1 (17) | 3.19 (0.30–33.89) | ||
| 5–10 | 8 (14) | 8 (16) | 0 | --- | ||
| >10 | 11 (20) | 9 (18) | 2 (33) | 0.84 (0.12–6.03) | ||
| HAART | 0.459 | |||||
| Yes | 44 (79) | 40 (80) | 4 (67) | 1 (Reference) | ||
| No | 12 (21) | 10 (20) | 2 (33) | 0.50 (0.08–3.13) | ||
| STD at the time of the study |
| |||||
| Yes | 47 (84) | 44 (88) | 3 (50) |
| ||
| No | 9 (16) | 6 (12) | 3 (50) | 1 (Reference) | ||
| History of STD (except HIV) | 0.690 | |||||
| Yes | 43 (77) | 38 (76) | 5 (83) | 0.63 (0.07–5.97) | ||
| No | 13 (23) | 12 (24) | 1 (17) | 1 (Reference) | ||
The values with statistical significance appear in italic letters
HPV Human papillomavirus, OR Odd ratio, IQR Inter-quartile ratio, CI Confidence interval, MSM Men who have sex with men STD Sexually transmitted diseases, HIV Human immunodeficiency virus, HAART High activity anti-retroviral therapy
HPV types distribution in HIV positive men according to anal cytology classification
| HPV type | Cytology classification | |||||
|---|---|---|---|---|---|---|
| NLIM | ASC-US | LSIL | ASC-H | HSIL | Total | |
| HR-HPV types | 3 (100) | 9 (64) | 27 (79) | 2 (100) | 3 (100) | 44 (79) |
| HPV-16 | 2 (67) | 6 (43) | 17 (50) | 2 (100) | 2 (67) | 29 (52) |
| HPV-18 | 1 (33) | 1 (7) | 11 (32) | 1 (50) | 3 (100) | 17 (30) |
| HPV-31 | 0 | 1 (7) | 5 (15) | 0 | 1 (33) | 7 (12) |
| HPV-33 | 1 (33) | 3 (21) | 11 (32) | 0 | 0 | 15 (27) |
| HPV-45 | 1 (33) | 2 (14) | 5 (15) | 1 (50) | 0 | 9 (16) |
| HPV-58 | 2 (67) | 0 | 8 (24) | 0 | 2 (67) | 12 (21) |
| HPV 16–18 only | 1 (33) | 0 | 4 (12) | 0 | 1 (33) | 6 (11) |
| HPV 16–18 and other HR-HPV | 1 (33) | 0 | 7 (21) | 1 (50) | 2 (67) | 11 (20) |
| Multiple infections | 3 (100) | 7 (50) | 26 (76) | 1 (50) | 3 (100) | 40 (71) |
HR-HPV types (16, 18, 31, 33, 45 and 58)
Fig. 1Comparison of the medians of HPV viral load among each anal cytology classification. Abbreviations: ASC-US: atypical squamous cells of undetermined significance, ASC-H: atypical squamous cells of undetermined significance cannot exclude high-grade lesions, LSIL: low-grade squamous intraepithelial lesions, HSIL: high-grade squamous intraepithelial lesions, NILM: negative for intraepithelial lesion and malignancy