Literature DB >> 28113310

Seamless Lesion Insertion for Data Augmentation in CAD Training.

Aria Pezeshk, Nicholas Petrick, Berkman Sahiner.   

Abstract

The performance of a classifier is largely dependent on the size and representativeness of data used for its training. In circumstances where accumulation and/or labeling of training samples is difficult or expensive, such as medical applications, data augmentation can potentially be used to alleviate the limitations of small datasets. We have previously developed an image blending tool that allows users to modify or supplement an existing CT or mammography dataset by seamlessly inserting a lesion extracted from a source image into a target image. This tool also provides the option to apply various types of transformations to different properties of the lesion prior to its insertion into a new location. In this study, we used this tool to create synthetic samples that appear realistic in chest CT. We then augmented different size training sets with these artificial samples, and investigated the effect of the augmentation on training various classifiers for the detection of lung nodules. Our results indicate that the proposed lesion insertion method can improve classifier performance for small training datasets, and thereby help reduce the need to acquire and label actual patient data.

Entities:  

Mesh:

Year:  2016        PMID: 28113310      PMCID: PMC5509514          DOI: 10.1109/TMI.2016.2640180

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  15 in total

1.  Classifier design for computer-aided diagnosis: effects of finite sample size on the mean performance of classical and neural network classifiers.

Authors:  H P Chan; B Sahiner; R F Wagner; N Petrick
Journal:  Med Phys       Date:  1999-12       Impact factor: 4.071

2.  Feature selection and classifier performance in computer-aided diagnosis: the effect of finite sample size.

Authors:  B Sahiner; H P Chan; N Petrick; R F Wagner; L Hadjiiski
Journal:  Med Phys       Date:  2000-07       Impact factor: 4.071

3.  Simulation of mammographic lesions.

Authors:  Robert Saunders; Ehsan Samei; Jay Baker; David Delong
Journal:  Acad Radiol       Date:  2006-07       Impact factor: 3.173

4.  Exploratory undersampling for class-imbalance learning.

Authors:  Xu-Ying Liu; Jianxin Wu; Zhi-Hua Zhou
Journal:  IEEE Trans Syst Man Cybern B Cybern       Date:  2008-12-16

5.  Three-dimensional simulation of lung nodules for paediatric multidetector array CT.

Authors:  X Li; E Samei; D M Delong; R P Jones; A M Gaca; C L Hollingsworth; C M Maxfield; C W T Carrico; D P Frush
Journal:  Br J Radiol       Date:  2009-01-19       Impact factor: 3.039

6.  Small-sample precision of ROC-related estimates.

Authors:  Blaise Hanczar; Jianping Hua; Chao Sima; John Weinstein; Michael Bittner; Edward R Dougherty
Journal:  Bioinformatics       Date:  2010-02-03       Impact factor: 6.937

7.  Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach.

Authors:  E R DeLong; D M DeLong; D L Clarke-Pearson
Journal:  Biometrics       Date:  1988-09       Impact factor: 2.571

8.  Seamless Insertion of Pulmonary Nodules in Chest CT Images.

Authors:  Aria Pezeshk; Berkman Sahiner; Rongping Zeng; Adam Wunderlich; Weijie Chen; Nicholas Petrick
Journal:  IEEE Trans Biomed Eng       Date:  2015-06-12       Impact factor: 4.538

9.  The Lung Image Database Consortium (LIDC) and Image Database Resource Initiative (IDRI): a completed reference database of lung nodules on CT scans.

Authors:  Samuel G Armato; Geoffrey McLennan; Luc Bidaut; Michael F McNitt-Gray; Charles R Meyer; Anthony P Reeves; Binsheng Zhao; Denise R Aberle; Claudia I Henschke; Eric A Hoffman; Ella A Kazerooni; Heber MacMahon; Edwin J R Van Beeke; David Yankelevitz; Alberto M Biancardi; Peyton H Bland; Matthew S Brown; Roger M Engelmann; Gary E Laderach; Daniel Max; Richard C Pais; David P Y Qing; Rachael Y Roberts; Amanda R Smith; Adam Starkey; Poonam Batrah; Philip Caligiuri; Ali Farooqi; Gregory W Gladish; C Matilda Jude; Reginald F Munden; Iva Petkovska; Leslie E Quint; Lawrence H Schwartz; Baskaran Sundaram; Lori E Dodd; Charles Fenimore; David Gur; Nicholas Petrick; John Freymann; Justin Kirby; Brian Hughes; Alessi Vande Casteele; Sangeeta Gupte; Maha Sallamm; Michael D Heath; Michael H Kuhn; Ekta Dharaiya; Richard Burns; David S Fryd; Marcos Salganicoff; Vikram Anand; Uri Shreter; Stephen Vastagh; Barbara Y Croft
Journal:  Med Phys       Date:  2011-02       Impact factor: 4.071

10.  Automatic multiscale enhancement and segmentation of pulmonary vessels in CT pulmonary angiography images for CAD applications.

Authors:  Chuan Zhou; Heang-Ping Chan; Berkman Sahiner; Lubomir M Hadjiiski; Aamer Chughtai; Smita Patel; Jun Wei; Jun Ge; Philip N Cascade; Ella A Kazerooni
Journal:  Med Phys       Date:  2007-12       Impact factor: 4.071

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  9 in total

1.  Evaluation of data augmentation via synthetic images for improved breast mass detection on mammograms using deep learning.

Authors:  Kenny H Cha; Nicholas Petrick; Aria Pezeshk; Christian G Graff; Diksha Sharma; Andreu Badal; Berkman Sahiner
Journal:  J Med Imaging (Bellingham)       Date:  2019-11-22

2.  Computational insertion of microcalcification clusters on mammograms: reader differentiation from native clusters and computer-aided detection comparison.

Authors:  Zahra Ghanian; Aria Pezeshk; Nicholas Petrick; Berkman Sahiner
Journal:  J Med Imaging (Bellingham)       Date:  2018-11-19

3.  Techniques for virtual lung nodule insertion: volumetric and morphometric comparison of projection-based and image-based methods for quantitative CT.

Authors:  Marthony Robins; Justin Solomon; Pooyan Sahbaee; Martin Sedlmair; Kingshuk Roy Choudhury; Aria Pezeshk; Berkman Sahiner; Ehsan Samei
Journal:  Phys Med Biol       Date:  2017-08-22       Impact factor: 3.609

Review 4.  Deep Learning in Medical Image Analysis.

Authors:  Heang-Ping Chan; Ravi K Samala; Lubomir M Hadjiiski; Chuan Zhou
Journal:  Adv Exp Med Biol       Date:  2020       Impact factor: 2.622

5.  Improving the Subtype Classification of Non-small Cell Lung Cancer by Elastic Deformation Based Machine Learning.

Authors:  Yang Gao; Fan Song; Peng Zhang; Jian Liu; Jingjing Cui; Yingying Ma; Guanglei Zhang; Jianwen Luo
Journal:  J Digit Imaging       Date:  2021-05-07       Impact factor: 4.903

Review 6.  Virtual clinical trials in medical imaging: a review.

Authors:  Ehsan Abadi; William P Segars; Benjamin M W Tsui; Paul E Kinahan; Nick Bottenus; Alejandro F Frangi; Andrew Maidment; Joseph Lo; Ehsan Samei
Journal:  J Med Imaging (Bellingham)       Date:  2020-04-11

7.  A holistic overview of deep learning approach in medical imaging.

Authors:  Rammah Yousef; Gaurav Gupta; Nabhan Yousef; Manju Khari
Journal:  Multimed Syst       Date:  2022-01-21       Impact factor: 2.603

8.  A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections.

Authors:  Fernando Pérez-García; Reuben Dorent; Michele Rizzi; Francesco Cardinale; Valerio Frazzini; Vincent Navarro; Caroline Essert; Irène Ollivier; Tom Vercauteren; Rachel Sparks; John S Duncan; Sébastien Ourselin
Journal:  Int J Comput Assist Radiol Surg       Date:  2021-06-13       Impact factor: 2.924

9.  Computer-aided diagnosis with a convolutional neural network algorithm for automated detection of urinary tract stones on plain X-ray.

Authors:  Masaki Kobayashi; Junichiro Ishioka; Yoh Matsuoka; Yuichi Fukuda; Yusuke Kohno; Keizo Kawano; Shinji Morimoto; Rie Muta; Motohiro Fujiwara; Naoko Kawamura; Tetsuo Okuno; Soichiro Yoshida; Minato Yokoyama; Rumi Suda; Ryota Saiki; Kenji Suzuki; Itsuo Kumazawa; Yasuhisa Fujii
Journal:  BMC Urol       Date:  2021-08-05       Impact factor: 2.264

  9 in total

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