Literature DB >> 28108354

ABCs of DNA aptamer and related assay development.

Tarun Kumar Sharma1, John G Bruno2, Abhijeet Dhiman3.   

Abstract

This review is intended to guide the novice in aptamer research and development to understand virtually all of the aptamer development options and currently available assay modalities. Aptamer development topics range from discussions of basic and advanced versions of Systematic Evolution of Ligands by EXponential Enrichment (SELEX) and SELEX variations involving incorporation of exotic unnatural nucleotides to expand library diversity for even greater aptamer affinity and specificity to improved next generation methods of DNA sequencing, screening and tracking aptamer development throughout the SELEX process and characterization of lead aptamer candidates. Aptamer assay development topics include descriptions of various colorimetric and fluorescent assays in microplates or on membranes including homogeneous beacon and multiplexed Fluorescence Resonance Energy Transfer (FRET) assays. Finally, a discussion of the potential for marketing successful aptamer-based assays or test kits is included.
Copyright © 2017 Elsevier Inc. All rights reserved.

Keywords:  Aptamer Linked Immunosorbent Assay (ALISA); Aptamer library; Aptamers; Colorimetric assay; FRET; Post-SELEX optimization; SELEX; Translation of aptamers; ssDNA generation

Mesh:

Substances:

Year:  2017        PMID: 28108354     DOI: 10.1016/j.biotechadv.2017.01.003

Source DB:  PubMed          Journal:  Biotechnol Adv        ISSN: 0734-9750            Impact factor:   14.227


  34 in total

Review 1.  Materials and microfluidics: enabling the efficient isolation and analysis of circulating tumour cells.

Authors:  Joshua M Jackson; Małgorzata A Witek; Joyce W Kamande; Steven A Soper
Journal:  Chem Soc Rev       Date:  2017-07-17       Impact factor: 54.564

Review 2.  The research of aptamer biosensor technologies for detection of microorganism.

Authors:  Jiecan Yi; Wen Xiao; Guiyin Li; Pian Wu; Yayuan He; Cuimei Chen; Yafei He; Ping Ding; Tianhan Kai
Journal:  Appl Microbiol Biotechnol       Date:  2020-10-13       Impact factor: 4.813

3.  Proteomic studies of bone and skeletal health outcomes.

Authors:  Carrie M Nielson; Jon M Jacobs; Eric S Orwoll
Journal:  Bone       Date:  2019-04-04       Impact factor: 4.398

4.  In vitro selection of DNA aptamers for the development of chemiluminescence aptasensor for neuron-specific enolase (NSE) detection.

Authors:  Yue Zheng; Yunwang Zhao; Ya Di; Lei He; Shiqi Liao; Dongdong Li; Xiaofei Liu
Journal:  RSC Adv       Date:  2019-05-17       Impact factor: 4.036

5.  Phthalic Acid Ester-Binding DNA Aptamer Selection, Characterization, and Application to an Electrochemical Aptasensor.

Authors:  Xiao Wu; Donglin Diao; Zhangwei Lu; Yu Han; Shi Xu; Xinhui Lou
Journal:  J Vis Exp       Date:  2018-03-21       Impact factor: 1.355

6.  A composite prepared from carboxymethyl chitosan and aptamer-modified gold nanoparticles for the colorimetric determination of Salmonella typhimurium.

Authors:  Jiecan Yi; Pian Wu; Guiyin Li; Wen Xiao; Lei Li; Yayuan He; Yafei He; Ping Ding; Cuimei Chen
Journal:  Mikrochim Acta       Date:  2019-10-24       Impact factor: 5.833

7.  DNA assay based on Nanoceria as Fluorescence Quenchers (NanoCeracQ DNA assay).

Authors:  Gonca Bülbül; Akhtar Hayat; Fatima Mustafa; Silvana Andreescu
Journal:  Sci Rep       Date:  2018-02-05       Impact factor: 4.379

Review 8.  Nanotechnology-Based Strategies for Early Cancer Diagnosis Using Circulating Tumor Cells as a Liquid Biopsy.

Authors:  Qinqin Huang; Yin Wang; Xingxiang Chen; Yimeng Wang; Zhiqiang Li; Shiming Du; Lianrong Wang; Shi Chen
Journal:  Nanotheranostics       Date:  2018-01-01

Review 9.  Nanotechnology and Glycosaminoglycans: Paving the Way Forward for Ovarian Cancer Intervention.

Authors:  Yasar Hoosen; Priyamvada Pradeep; Pradeep Kumar; Lisa C du Toit; Yahya E Choonara; Viness Pillay
Journal:  Int J Mol Sci       Date:  2018-03-04       Impact factor: 5.923

10.  Facile Determination of Sodium Ion and Osmolarity in Artificial Tears by Sequential DNAzymes.

Authors:  Eun Hye Kim; Eun-Song Lee; Dong Yun Lee; Young-Pil Kim
Journal:  Sensors (Basel)       Date:  2017-12-07       Impact factor: 3.576

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