| Rule 1: Make Software Open-Source |
| Github | https://github.com |
| CRAN | https://cran.r-project.org |
| Bioconductor | https://www.bioconductor.org |
| Rule 2: Provide Open-Source Data (When Possible) |
| Deposit Source Data in Appropriate Repositories |
| Sequence Read Archive (SRA) | https://www.ncbi.nlm.nih.gov/sra |
| Gene Expression Omnibus (GEO) | https://www.ncbi.nlm.nih.gov/geo |
| ClinVar | https://www.ncbi.nlm.nih.gov/clinvar |
| Consider Middle-Ground Data Sharing Approaches for Sensitive Data |
| dbGaP | https://www.ncbi.nlm.nih.gov/gap |
| Shared Health Research Information Network (SHRINE) | https://catalyst.harvard.edu/services/shrine |
| BioGrid Australia | https://www.biogrid.org.au |
| Rule 3: Use Multiple Platforms to Share Research Products |
| Figshare | https://figshare.com |
| Github | https://github.com |
| ExAC Browser | http://exac.broadinstitute.org |
| Google Forums | |
| Rule 4: Secure Necessary Permissions/Data Use Agreements A Priori |
| Guides for Creating a DUA |
| Department of Health and Human Services Best Practice Guide for DUA | http://www.hhs.gov/ocio/eplc/EPLC%20Archive%20Documents/55-Data%20Use%20Agreement%20(DUA)/eplc_dua_practices_guide.pdf |
| Health Care Systems Research Network DUA Toolkit | http://www.hcsrn.org/en/Tools%20&%20Materials/GrantsContracting/HCSRN_DUAToolkit.pdf |
| Example DUAs |
| NASA DUA | http://above.nasa.gov/Documents/NGA_Data_Access_Agreement_new.pdf |
| SEER-MEDICARE DUA | https://healthcaredelivery.cancer.gov/seermedicare/obtain/seerdua.docx |
| Rule 5: Know the Privacy Rules for Your Data |
| Health Insurance Portability and Accountability Act (HIPAA) | http://www.hhs.gov/hipaa/for-professionals/privacy |
| Rule 6: Facilitate Reproducibility |
| Resources for Increasing Research Reproducibility |
| MetaSub Research Integrity and Reproducibility | http://metasub.org/research-integrity-and-reproducibility/ |
| Reproducibility and Open Science Working Group—GitHub | http://uwescience.github.io/reproducible/guidelines.html
https://github.com/uwescience/reproducible |
| Example Projects with Assessed Reproducibility |
| eMERGE PheKB | https://phekb.org/network-associations/emerge |
| Rule 7: Think Global |
| Guides for Collaborating Globally |
| National Academies “Collaborating with Foreign Partners to Meet Global Challenges”Resources | http://sites.nationalacademies.org/PGA/PGA_041691 |
| Global Alliance for Genomics and Health | http://genomicsandhealth.org/work-products-demonstration-projects/catalogue-global-activities-international-genomic-data-initiati |
| The Global Strategy of the US Department of Health and Human Services | http://www.hhs.gov/sites/default/files/hhs-global-strategy.pdf |
| Examples of Successful International Projects |
| Human Fertility Database | http://www.humanfertility.org/cgi-bin/main.php |
| Human Mortality Database | http://www.mortality.org |
| Rule 8: Publicize Your Work |
| Research Without Novelty Requirement |
| PLOS ONE | http://journals.plos.org/plosone |
| Scientific Reports | http://www.nature.com/srep |
| Cell Reports | http://www.cell.com/cell-reports/home |
| Data Resources (Web Browsers, Databases) |
| Scientific Data | http://www.nature.com/sdata |
| Database | https://database.oxfordjournals.org |
| Pure Open Science Research (all data must be open) |
| F1000 | https://f1000research.com |
| Rule 9: Stay Realistic |
| Retraction Watch | retractionwatch.com |
| Rule 10: Be Engaged |
| Resources to Facilitate Researcher Engagement |
| KNAER Creating Partnerships: Learning New Ways to Connect | http://www.knaer-recrae.ca/blog-news-events |
| Example Projects with Researcher Engagement |
| STAN | http://mc-stan.org |
| STAN “swag” | http://mc-stan.org/shop |