Literature DB >> 28095651

Transcriptional dynamics of tail regeneration in Xenopus tropicalis.

Jessica Chang1, Julie Baker1,2, Andrea Wills3.   

Abstract

In contrast to humans, many amphibians are able to rapidly and completely regenerate complex tissues, including entire appendages. Following tail amputation, Xenopus tropicalis tadpoles quickly regenerate muscle, spinal cord, cartilage, vasculature and skin, all properly patterned in three dimensions. To better understand the molecular basis of this regenerative competence, we performed a transcriptional analysis of the first 72 h of tail regeneration using RNA-Seq. Our analysis refines the windows during which many key biological signaling processes act in regeneration, including embryonic patterning signals, immune responses, bioelectrical signaling and apoptosis. Our work provides a deep database for researchers interested in appendage regeneration, and points to new avenues for further study.
© 2017 Wiley Periodicals, Inc.

Entities:  

Keywords:  Amphibian; genomics; organism; process; transcription

Mesh:

Year:  2017        PMID: 28095651     DOI: 10.1002/dvg.23015

Source DB:  PubMed          Journal:  Genesis        ISSN: 1526-954X            Impact factor:   2.487


  10 in total

Review 1.  Bioelectric signaling in regeneration: Mechanisms of ionic controls of growth and form.

Authors:  Kelly A McLaughlin; Michael Levin
Journal:  Dev Biol       Date:  2017-12-25       Impact factor: 3.582

2.  The AP-1 transcription factor JunB functions in Xenopus tail regeneration by positively regulating cell proliferation.

Authors:  Makoto Nakamura; Hitoshi Yoshida; Eri Takahashi; Marcin Wlizla; Kimiko Takebayashi-Suzuki; Marko E Horb; Atsushi Suzuki
Journal:  Biochem Biophys Res Commun       Date:  2019-12-04       Impact factor: 3.575

Review 3.  Advancing genetic and genomic technologies deepen the pool for discovery in Xenopus tropicalis.

Authors:  Anneke Kakebeen; Andrea Wills
Journal:  Dev Dyn       Date:  2019-07-09       Impact factor: 3.780

4.  Hif1α and Wnt are required for posterior gene expression during Xenopus tropicalis tail regeneration.

Authors:  Jeet H Patel; Preston A Schattinger; Evan E Takayoshi; Andrea E Wills
Journal:  Dev Biol       Date:  2022-01-20       Impact factor: 3.582

5.  TGF-β1 signaling is essential for tissue regeneration in the Xenopus tadpole tail.

Authors:  Makoto Nakamura; Hitoshi Yoshida; Yuka Moriyama; Itsuki Kawakita; Marcin Wlizla; Kimiko Takebayashi-Suzuki; Marko E Horb; Atsushi Suzuki
Journal:  Biochem Biophys Res Commun       Date:  2021-06-05       Impact factor: 3.322

6.  The role of nitric oxide during embryonic wound healing.

Authors:  Pavel Abaffy; Silvie Tomankova; Ravindra Naraine; Mikael Kubista; Radek Sindelka
Journal:  BMC Genomics       Date:  2019-11-06       Impact factor: 3.969

7.  Evolutionary conservation of leptin effects on wound healing in vertebrates: Implications for veterinary medicine.

Authors:  Robyn E Reeve; Kyla Quale; Grace H Curtis; Erica J Crespi
Journal:  Front Endocrinol (Lausanne)       Date:  2022-08-25       Impact factor: 6.055

8.  Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors.

Authors:  Anneke Dixie Kakebeen; Alexander Daniel Chitsazan; Madison Corinne Williams; Lauren M Saunders; Andrea Elizabeth Wills
Journal:  Elife       Date:  2020-04-27       Impact factor: 8.140

9.  An in vivo brain-bacteria interface: the developing brain as a key regulator of innate immunity.

Authors:  Celia Herrera-Rincon; Jean-Francois Paré; Christopher J Martyniuk; Sophia K Jannetty; Christina Harrison; Alina Fischer; Alexandre Dinis; Vishal Keshari; Richard Novak; Michael Levin
Journal:  NPJ Regen Med       Date:  2020-02-04

10.  Comparative gene expression profiling between optic nerve and spinal cord injury in Xenopus laevis reveals a core set of genes inherent in successful regeneration of vertebrate central nervous system axons.

Authors:  Jamie L Belrose; Aparna Prasad; Morgan A Sammons; Kurt M Gibbs; Ben G Szaro
Journal:  BMC Genomics       Date:  2020-08-05       Impact factor: 3.969

  10 in total

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