Literature DB >> 28092685

Precision oncology for acute myeloid leukemia using a knowledge bank approach.

Moritz Gerstung1,2, Elli Papaemmanuil1,3, Inigo Martincorena1, Lars Bullinger4, Verena I Gaidzik4, Peter Paschka4, Michael Heuser5, Felicitas Thol5, Niccolo Bolli1,6, Peter Ganly7, Arnold Ganser5, Ultan McDermott1, Konstanze Döhner4, Richard F Schlenk4, Hartmut Döhner4, Peter J Campbell1,8.   

Abstract

Underpinning the vision of precision medicine is the concept that causative mutations in a patient's cancer drive its biology and, by extension, its clinical features and treatment response. However, considerable between-patient heterogeneity in driver mutations complicates evidence-based personalization of cancer care. Here, by reanalyzing data from 1,540 patients with acute myeloid leukemia (AML), we explore how large knowledge banks of matched genomic-clinical data can support clinical decision-making. Inclusive, multistage statistical models accurately predicted likelihoods of remission, relapse and mortality, which were validated using data from independent patients in The Cancer Genome Atlas. Comparison of long-term survival probabilities under different treatments enables therapeutic decision support, which is available in exploratory form online. Personally tailored management decisions could reduce the number of hematopoietic cell transplants in patients with AML by 20-25% while maintaining overall survival rates. Power calculations show that databases require information from thousands of patients for accurate decision support. Knowledge banks facilitate personally tailored therapeutic decisions but require sustainable updating, inclusive cohorts and large sample sizes.

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Year:  2017        PMID: 28092685      PMCID: PMC5764082          DOI: 10.1038/ng.3756

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  28 in total

1.  Sample size considerations for the evaluation of prognostic factors in survival analysis.

Authors:  C Schmoor; W Sauerbrei; M Schumacher
Journal:  Stat Med       Date:  2000-02-29       Impact factor: 2.373

2.  A new initiative on precision medicine.

Authors:  Francis S Collins; Harold Varmus
Journal:  N Engl J Med       Date:  2015-01-30       Impact factor: 91.245

3.  The origin and evolution of mutations in acute myeloid leukemia.

Authors:  John S Welch; Timothy J Ley; Daniel C Link; Christopher A Miller; David E Larson; Daniel C Koboldt; Lukas D Wartman; Tamara L Lamprecht; Fulu Liu; Jun Xia; Cyriac Kandoth; Robert S Fulton; Michael D McLellan; David J Dooling; John W Wallis; Ken Chen; Christopher C Harris; Heather K Schmidt; Joelle M Kalicki-Veizer; Charles Lu; Qunyuan Zhang; Ling Lin; Michelle D O'Laughlin; Joshua F McMichael; Kim D Delehaunty; Lucinda A Fulton; Vincent J Magrini; Sean D McGrath; Ryan T Demeter; Tammi L Vickery; Jasreet Hundal; Lisa L Cook; Gary W Swift; Jerry P Reed; Patricia A Alldredge; Todd N Wylie; Jason R Walker; Mark A Watson; Sharon E Heath; William D Shannon; Nobish Varghese; Rakesh Nagarajan; Jacqueline E Payton; Jack D Baty; Shashikant Kulkarni; Jeffery M Klco; Michael H Tomasson; Peter Westervelt; Matthew J Walter; Timothy A Graubert; John F DiPersio; Li Ding; Elaine R Mardis; Richard K Wilson
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

4.  Economics of hematopoietic cell transplantation.

Authors:  Nandita Khera; Steven B Zeliadt; Stephanie J Lee
Journal:  Blood       Date:  2012-06-13       Impact factor: 22.113

5.  Sample-size formula for the proportional-hazards regression model.

Authors:  D A Schoenfeld
Journal:  Biometrics       Date:  1983-06       Impact factor: 2.571

Review 6.  Lessons from the cancer genome.

Authors:  Levi A Garraway; Eric S Lander
Journal:  Cell       Date:  2013-03-28       Impact factor: 41.582

7.  DNMT3A mutations in acute myeloid leukemia.

Authors:  Timothy J Ley; Li Ding; Matthew J Walter; Michael D McLellan; Tamara Lamprecht; David E Larson; Cyriac Kandoth; Jacqueline E Payton; Jack Baty; John Welch; Christopher C Harris; Cheryl F Lichti; R Reid Townsend; Robert S Fulton; David J Dooling; Daniel C Koboldt; Heather Schmidt; Qunyuan Zhang; John R Osborne; Ling Lin; Michelle O'Laughlin; Joshua F McMichael; Kim D Delehaunty; Sean D McGrath; Lucinda A Fulton; Vincent J Magrini; Tammi L Vickery; Jasreet Hundal; Lisa L Cook; Joshua J Conyers; Gary W Swift; Jerry P Reed; Patricia A Alldredge; Todd Wylie; Jason Walker; Joelle Kalicki; Mark A Watson; Sharon Heath; William D Shannon; Nobish Varghese; Rakesh Nagarajan; Peter Westervelt; Michael H Tomasson; Daniel C Link; Timothy A Graubert; John F DiPersio; Elaine R Mardis; Richard K Wilson
Journal:  N Engl J Med       Date:  2010-11-10       Impact factor: 91.245

8.  Phase III study of all-trans retinoic acid in previously untreated patients 61 years or older with acute myeloid leukemia.

Authors:  R F Schlenk; S Fröhling; F Hartmann; J Th Fischer; A Glasmacher; F del Valle; W Grimminger; K Götze; C Waterhouse; R Schoch; H Pralle; H G Mergenthaler; M Hensel; E Koller; H Kirchen; J Preiss; H Salwender; H G Biedermann; S Kremers; F Griesinger; A Benner; B Addamo; K Döhner; R Haas; H Döhner
Journal:  Leukemia       Date:  2004-11       Impact factor: 11.528

9.  Treatment of de novo acute myeloid leukemia in the United States: a report from the Patterns of Care program.

Authors:  V Paul Doria-Rose; Linda C Harlan; Jennifer Stevens; Richard F Little
Journal:  Leuk Lymphoma       Date:  2014-03-07

Review 10.  Should persons with acute myeloid leukemia have a transplant in first remission?

Authors:  R P Gale; P H Wiernik; H M Lazarus
Journal:  Leukemia       Date:  2014-04-14       Impact factor: 11.528

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  88 in total

1.  External validation and comparison of multiple prognostic scores in allogeneic hematopoietic stem cell transplantation.

Authors:  Roni Shouval; Joshua A Fein; Aniela Shouval; Ivetta Danylesko; Noga Shem-Tov; Maya Zlotnik; Ronit Yerushalmi; Avichai Shimoni; Arnon Nagler
Journal:  Blood Adv       Date:  2019-06-25

Review 2.  Deep learning for healthcare: review, opportunities and challenges.

Authors:  Riccardo Miotto; Fei Wang; Shuang Wang; Xiaoqian Jiang; Joel T Dudley
Journal:  Brief Bioinform       Date:  2018-11-27       Impact factor: 11.622

3.  How good are we at predicting the fate of someone with acute myeloid leukaemia?

Authors:  E Estey; R P Gale
Journal:  Leukemia       Date:  2017-03-17       Impact factor: 11.528

Review 4.  New Treatment Options for Acute Myeloid Leukemia in 2019.

Authors:  Marco Cerrano; Raphael Itzykson
Journal:  Curr Oncol Rep       Date:  2019-02-04       Impact factor: 5.075

5.  The increasing complexity of the management of core-binding factor acute myeloid leukemia.

Authors:  Mark R Litzow
Journal:  Haematologica       Date:  2020-06       Impact factor: 9.941

6.  Artificial Intelligence and Personalized Medicine.

Authors:  Nicholas J Schork
Journal:  Cancer Treat Res       Date:  2019

7.  Automated decision tree to evaluate genetic abnormalities when determining prognostic risk in acute myeloid leukemia.

Authors:  Kevin Watanabe-Smith; Brian J Druker; Jeffrey W Tyner; David K Edwards
Journal:  Haematologica       Date:  2018-03-22       Impact factor: 9.941

8.  Can we forecast induction failure in acute myeloid leukemia?

Authors:  Felicitas Thol
Journal:  Haematologica       Date:  2018-03       Impact factor: 9.941

9.  Analysis of the genomic landscape of multiple myeloma highlights novel prognostic markers and disease subgroups.

Authors:  N Bolli; G Biancon; M Moarii; S Gimondi; Y Li; C de Philippis; F Maura; V Sathiaseelan; Y-T Tai; L Mudie; S O'Meara; K Raine; J W Teague; A P Butler; C Carniti; M Gerstung; T Bagratuni; E Kastritis; M Dimopoulos; P Corradini; K Anderson; P Moreau; S Minvielle; P J Campbell; E Papaemmanuil; H Avet-Loiseau; N C Munshi
Journal:  Leukemia       Date:  2017-12-06       Impact factor: 11.528

Review 10.  How Machine Learning Will Transform Biomedicine.

Authors:  Jeremy Goecks; Vahid Jalili; Laura M Heiser; Joe W Gray
Journal:  Cell       Date:  2020-04-02       Impact factor: 41.582

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