| Literature DB >> 28090537 |
Yang Song1, Zhenwu Du2, Ming Ren1, Qiwei Yang3, Yujie Sui3, Qingyu Wang3, Ao Wang4, Haiyue Zhao3, Jincheng Wang1, Guizhen Zhang2.
Abstract
Sex determining region Y-box 9 (SOX9) is a key transcription factor involved in cartilage formation during the embryonic development stage and cartilage growth and repair after birth. To explore the roles of polymorphism and expression of the SOX9 gene in the development of osteonecrosis of the femoral head (ONFH), we analyzed the polymorphism of rs12601701 [A/G] and rs1042667 [A/C] and the serum protein expression of the SOX9 gene in 182 patients with ONFH and 179 healthy control subjects. Results revealed that the A-A haplotype of SOX9 gene as well as the GG and AA genotypes of rs12601701 was significantly associated with increased ONFH risk (P = 0.038) and the risk of bilateral hip lesions of ONFH (P = 0.009), respectively. The C-A, A-A, and A-G haplotypes were also statistically associated with the decreased and increased risk of bilateral hip lesions of ONFH (P = 0.03, P = 0.048, and P = 0.013), respectively, while the A-A haplotype closely related to the clinical stages of ONFH (P = 0.041). More importantly, the serum SOX9 protein expression of the ONFH group was greatly decreased compared to control group (P = 0.0001). Our results first showed that the gene polymorphism and gene expression of SOX9 were significantly associated with the risk and clinical phenotypes of ONFH and also indicate that the SOX9 gene may play a key role in the development of ONFH.Entities:
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Year: 2016 PMID: 28090537 PMCID: PMC5174161 DOI: 10.1155/2016/5695317
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
Primers and probes for the target SNP genotypes of SOX9 following LDR.
| dbSNP | Primera | Probeb | Product sizec |
|---|---|---|---|
| rs12601701 [A/G] | Sense: TCATACAACTAAGTACAGACG | TA:TTTTTTGACACAGAAATAGGTCCACACTACA | 61/A, |
| Antisense: TGCATACAATAGCTTCGTATC | TG:TTTTTTTTTGACACAGAAATAGGTCCACACTACG | 64/G | |
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| rs1042667 [A/C] | Sense: CACTGGGAACAACCCGTCTAC | TA:TTTTTTTTTTGAGGAGGCCTCCCACGAAGGGCGAA | 68/A, |
| Antisense: TCCAAAGGGAATTCTGGTTGG | TC:TTTTTTTTTTTTTGAGGAGGCCTCCCACGAAGGGCGAC | 71/C | |
aPrimer to amplify the gene fragment of the target dbSNP site.
bProbe to discriminate the target SNP genotype.
cProduct size indicates the size of the ligase reaction product from the different SNP genotypes.
Association of SOX9 gene polymorphism with ONFH risk.
| dbSNP ID | Position | Group | Genotype ( | MAF | HWEa | Codominants (11 versus 12 versus 22) | Dominants 12 + 22 versus 11 | Recessive 22 versus 11 + 12 | Allele 2 versus 1 | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 11 | 12 | 22 | OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | |||||
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| rs1042667 | 3′UTRb | CC | AC | AA | |||||||
| Control | 46 | 90 | 43 | 0.491 | 0.835 | 1.244 (0.658–2.352) | 0.971 (0.756–1.246) | 0.930 (0.714–1.212) | 0.906 (0.676–1.213) | ||
| ONFH | 51 | 92 | 39 | 0.467 | 0.937 | 0.502 | 0.815 | 0.930 | 0.508 | ||
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| rs12601701 | Promoter | AA | GA | GG | |||||||
| Control | 48 | 93 | 38 | 0.472 | 0.518 | 1.396 (0.737–2.644) | 0.734 (0.452–1.194) | 1.009 (0.582–1.749) | 1.179 (0.879–1.581) | ||
| ONFH | 61 | 85 | 36 | 0.431 | 0.571 | 0.306 | 0.213 | 0.974 | 0.271 | ||
a P values of deviation from Hardy-Weinberg equilibrium between the ONFH and control groups.
b3′untranslated region.
cLogistic regression analyses were used for calculations.
11: homozygotes for the major allele, 12: heterozygotes, and 22: homozygotes for the minor allele.
Association of SOX9 gene polymorphisms with ONFH subgroups.
| dbSNP | Subgroup | Genotype | MAF | Allele (2 versus 1) | Codominant (11 versus 12 versus 22) | Dominant (12 + 22 versus 11) | Recessive (22 versus 11 + 12) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11 | 12 | 22 | OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| |||
| rs1042667 (A>C) | AA | AC | CC | ||||||||||
| Ster▲ | 9 | 25 | 11 | 0.478 | 0.946 | 0.814 | 1.059 | 0.812 | 1.125 | 0.568 | 0.967 | 0.863 | |
| (0.596~1.503) | (0.662~1.692) | (0.751~1.684) | (0.662~1.413) | ||||||||||
| Alc▲ | 19 | 35 | 14 | 0.463 | 1.198 | 0.370 | 0.861 | 0.694 | 0.964 | 0.903 | 0.894 | 0.535 | |
| (0.807~1.780) | (0.408~1.817) | (0.135~1.736) | (0.627~1.274) | ||||||||||
| Idio▲ | 11 | 30 | 26 | 0.462 | 0.656 |
| 1.843 | 0.073 | 0.404 | 0.772 | 1.376 |
| |
| (0.437~0.982) | (0.945~3.593) | (0.420~1.418) | (1.005~1.883) | ||||||||||
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| rs12601701 (G>A) | GG | GA | AA | ||||||||||
| Ster | 9 | 23 | 13 | 0.456 | 1.069 | 0.779 | 1.053 | 0.896 | 1.014 | 0.968 | 1.038 | 0.939 | |
| (0.672~1.699) | (0.481~2.283) | (0.519~1.980) | (0.721~1.496) | ||||||||||
| Alc | 16 | 30 | 22 | 0.456 | 1.067 | 0.747 | 1.637 | 0.161 | 0.658 | 0.168 | 1.212 | 0.242 | |
| (0.715~1.586) | (0.821~3.624) | (0.363~1.192) | (0.878~1.672) | ||||||||||
| Idio | 11 | 26 | 30 | 0.358 | 1.410 | 0.095 | 1.790 | 0.085 | 0.757 | 0.370 | 1.343 | 0.065 | |
| (0.941~2.113) | (0.922~3.476) | (0.412~1.391) | (0.982~1.835) | ||||||||||
▲Alc: Alcohol-induced; Ster: steroid- induced; Idio: idiopathic; 11: homozygotes for the major allele; 12: heterozygotes; and 22: homozygotes for the minor allele.
#Logistic regression analyses were used. Bold: P value < 0.05.
Haplotype frequencies of the SOX9 gene between ONFH and control groups.
| Haplotype | Frequency | OR (95% CI) |
| |||
|---|---|---|---|---|---|---|
| rs1042667 | rs12601701 | Controls | Patients | |||
| Hap1 | A | A | 10.09 (2.8) | 21.49 (5.9) | 2.199 (1.026–4.717) |
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| Hap2 | A | G | 165.91 (46.3) | 148.51 (40.8) | 0.817 (0.608–1.099) | 0.182 |
| Hap3 | C | A | 178.91 (50.0) | 185.51 (51.0) | 1.073 (0.800–1.441) | 0.636 |
| Hap4 | C | G | 3.09 (0.9) | 8.49 (t2.3) | 2.745 (0.740–10.179) | 0.116 |
#: χ 2 test.
Association of the rs1042667 and rs12601701 genotypes of SOX9 gene with the clinical phenotypes of ONFH.
| dbSNP | Genotype | Sex | Disease course | Etiological classification | Unilateral or bilateral hips lesions | Clinical stage | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Men | Women | Alc | Ster | Idio | Unilateral | Bilateral | Stage II | Stage III | Stage IV | |||
| rs1042667 | AA | 30 (23.8) | 9 (16.1) | 86.72 + 74.80 | 19 (27.9) | 9 (20.0) | 11 (16.4) | 14 (17.7) | 25 (24.5) | 2 (15.4) | 10 (19.2) | 26 (23.2) |
| AC | 63 (50.0) | 29 (51.8) | 66.66 + 72.85 | 35 (51.5) | 25 (55.6) | 30 (44.8) | 39 (49.4) | 52 (51.0) | 8 (61.5) | 30 (57.7) | 52 (46.4) | |
| CC | 33 (26.2) | 18 (32.1) | 71.88 + 62.21 | 14 (20.6) | 11 (24.4) | 26 (38.8) | 26 (32.9) | 25 (24.5) | 3 (23.1) | 12 (23.1) | 34 (30.4) | |
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| 0.450 | 0.332 | 0.131 | 0.352 | 0.646 | |||||||
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| rs12601701 | AA | 41 (32.6) | 20 (35.7) | 65.13 + 60.99 | 22 (32.4) | 13 (28.9) | 26 (38.8) | 36 (45.6) | 25 (24.5) | 3 (23.1) | 20 (38.5) | 36 (32.2) |
| AG | 59 (46.8) | 26 (46.4) | 72.42 + 73.97 | 30 (44.1) | 23 (51.1) | 30 (44.8) | 32 (40.5) | 52 (51.0) | 7 (53.8) | 25 (48.0) | 51 (45.5) | |
| GG | 26 (20.6) | 10 (17.9) | 84.94 + 77.19 | 16 (23.5) | 9 (20.0) | 11 (16.4) | 11 (13.9) | 25 (24.5) | 3 (23.1) | 7 (13.5) | 25 (22.3) | |
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| 0.874 | 0.411 | 0.729 |
| 0.636 | |||||||
Haplotypes association of the SOX9 gene with hips lesions and clinical stages of ONFH.
| Clinical phenotypes | Subtype | rs1042667(A), rs12601701(A) | rs1042667(A), rs12601701(G) | rs1042667(C), rs12601701(A) | rs1042667(C), rs12601701(G) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| OR (95% CI) |
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| OR (95% CI) |
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| OR (95% CI) |
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| OR (95% CI) | ||
| Hip lesions | Unilateral | 14.09 (8.9) |
| 0.377 (0.150–0.947) | 52.91 (33.5) |
| 1.722 (1.120–2.647) | 89.91 (56.9) |
| 0.657 (0.432–0.997) | 1.09 (0.7) | 0.073 | 5.317 (0.703–40.228) |
| Bilateral | 7.24 (3.6) | 94.73 (46.4) | 94.73 (46.4) | 7.27 (3.6) | |||||||||
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| Clinical stages | Stage IV | 10.30 (4.6) |
| 0.408 (0.408–0.987) | 93.70 (41.8) | 0.457 | 1.198 (0.743–1.932) | 112.70 (50.3) | 0.786 | 0.937 (0.589–1.493) | 7.30 (3.3) | 0.063 | — |
| Stage III | 11.00 (10.6) | 39.00 (37.5) | 54.00 (51.9) | 0.00 (0) | |||||||||
Figure 1Serum protein expression of the SOX9 gene and the association of protein expression with SOX9 genotypes of ONFH. (a) The serum protein expression of the SOX9 gene between ONFH patients and control groups. # P = 0.0001, compared with control group. (b) Association of the SOX9 genotypes with serum SOX9 protein expression of the ONFH group. (c) Association of the SOX9 genotypes with serum SOX9 protein expression of the control group. The error bars in figures represent standard deviation.
Figure 2Association of SOX9 protein expression with the clinical phenotypes of ONFH. (a) Association of SOX9 protein expression with the clinical etiological classification of ONFH. (b) Association of SOX9 protein expression with the clinical stages of ONFH. (c) Association of SOX9 protein expression with unilateral hip or bilateral hips lesions in ONFH patients. The error bars in figures represent standard deviation.