| Literature DB >> 30697482 |
Jiaqi Wang1, Feimeng An1, Yuju Cao2, Hongyan Gao3, Mingqi Sun3, Chao Ma3, Hao Wu3, Baoxin Zhang3, Wanlin Liu3, Jianzhong Wang3.
Abstract
BACKGROUND: In clinical treatment, the use of steroid hormones is an important etiological factor of non-traumatic osteonecrosis of the femoral head (ONFH) risk. As an endogenous inhibitor of matrix metalloproteinases (MMPs) in the extracellular matrix, the expression of tissue inhibitors of metalloprotease-4 (TIMP4) plays an essential role in cartilage and bone tissue damage and remodeling, vasculitis formation, intravascular thrombosis, and lipid metabolism.Entities:
Keywords: Association study; Clinical phenotypes; Gene variants; Osteonecrosis of the femoral head; Single-nucleotide polymorphisms; Tissue inhibitors of metalloprotease-4
Year: 2019 PMID: 30697482 PMCID: PMC6348097 DOI: 10.7717/peerj.6270
Source DB: PubMed Journal: PeerJ ISSN: 2167-8359 Impact factor: 2.984
Characteristics of cases and controls in this study.
The basic characteristics of the study participants are listed in Table 1.
| 0.412 | |||
| Male | 173(46.8%) | 197(53.2%) | |
| Female | 113(50.2%) | 112(49.8%) | |
| 41.83 ±13.115 | 48.75 ±8.422 | <0.001 | |
| Stage II | 64(22.4%) | ||
| Stage III | 126(44.1%) | ||
| Stage IV | 96(33.5%) | ||
| Unilateral | 83(29.1%) | ||
| Bilateral | 203(70.9%) |
Notes.
Two-sided Chi-squared test.
Independent samples t test.
Allele frequencies in cases and controls and odds ratio estimates for steroid-induced ONFH.
The statistics of the allelic distributions, minor allele frequency (MAF), odds ratios (ORs), 95% confdence intervals (95% CIs) and the P-values of alleles are presented in Table 2.
|
| TIMP4 | 12152585 | T/C | 0.216 | 0.274 | 0.488 | 1 | 0.73 | 0.559 | 0.954 | |
|
| TIMP4 | 12153128 | T/C | 0.139 | 0.155 | 0.803 | 0.514 | 0.87 | 0.634 | 1.207 | 0.42 |
|
| TIMP4 | 12154122 | A/G | 0.219 | 0.274 | 1 | 1 | 0.75 | 0.571 | 0.973 | |
|
| TIMP4 | 12154174 | G/A | 0.222 | 0.273 | 0.607 | 1 | 0.76 | 0.582 | 0.988 | |
|
| TIMP4 | 12156160 | G/A | 0.094 | 0.115 | 0.726 | 1 | 0.80 | 0.553 | 1.167 | 0.25 |
|
| TIMP4 | 12157117 | C/A | 0.218 | 0.279 | 1 | 0.888 | 0.72 | 0.55 | 0.936 | |
|
| TIMP4 | 12159406 | C/T | 0.404 | 0.464 | 0.806 | 0.494 | 0.78 | 0.621 | 0.985 | |
Notes.
Minor allele.
Stratified analysis of TIMP4 polymorphisms with the gender and clinical phenotypes of steroid-induced ONFH.
Under the genotypes, rs3817004 showed a significant association with steroid-induced ONFH in gender, that is, in the heterozygous (GA) carriers of rs3817004 (G/A), the proportion (40.1%) of male was significantly increased compared with the proportion (30.1%) of female (p = 0.016). Bold values are statistically different (p ≤ 0.05).
|
| TT | 4(2.3) | 7(6,2) | 1(1.2) | 10(5) | 2(3.2) | 4(3.2) | 5(5.2) |
| TC | 63(36.6) | 38(33.6) | 25(30.1) | 76(37.6) | 16(25.4) | 55(43.7) | 30(31.2) | |
| CC | 105(61) | 68(60.2) | 57(68.7) | 116(57.4) | 45(71.4) | 67(53.2) | 61(63.5) | |
| 0.243 | 0.117 | 0.097 | ||||||
|
| TT | 3(1.7) | 3(2.7) | 1(1.2) | 5(2.5) | 0(0) | 2(1.6) | 4(4.2) |
| TC | 41(23.8) | 26(23) | 17(20.7) | 50(24.6) | 19(29.7) | 22(17.5) | 26(27.4) | |
| CC | 128(74.4) | 84(74.3) | 64(78) | 148(72.9) | 45(70.3) | 102(81) | 65(68.4) | |
| 0.866 | 0.602 | 0.077 | ||||||
|
| AA | 4(2.3) | 9(8) | 1(1.2) | 12(5.9) | 2(3.1) | 5(4) | 6(6.2) |
| AG | 64(37) | 35(3.1) | 25(30.1) | 74(36.6) | 17(26.6) | 53(42.4) | 29(30.2) | |
| GG | 105(60.7) | 68(60.7) | 57(68.7) | 116(57.4) | 45(70.3) | 67(53.6) | 61(63.5) | |
| 0.063 | 0.089 | 0.134 | ||||||
|
| GG | 3(1.7) | 9(8) | 1(1.2) | 11(5.4) | 2(3.1) | 5(4) | 5(5.2) |
| GA | 69(40.1) | 34(30.1) | 26(31.3) | 77(37.9) | 18(28.1) | 54(42.9) | 31(32.3) | |
| AA | 101(58.7) | 70(61.9) | 56(67.5) | 115(56.7) | 44(68.8) | 67(53.2) | 60(62.5) | |
| 0.113 | 0.245 | |||||||
|
| GG | 1(0.6) | 2(1.8) | 0(0) | 3(1.5) | 0(0) | 1(0.8) | 2(2.1) |
| GA | 31(17.9) | 17(15) | 13(15.7) | 35(17.2) | 14(21.9) | 14(11.1) | 20(20.8) | |
| AA | 141(81.5) | 94(83.2) | 70(84.3) | 165(81.3) | 50(78.1) | 111(88.1) | 74(77.1) | |
| 0.526 | 0.501 | 0.134 | ||||||
|
| CC | 5(2.9) | 8(7.1) | 1(1.2) | 12(5.9) | 3(4.8) | 6(4.8) | 4(4.2) |
| CA | 62(36) | 36(31.9) | 26(31.3) | 72(35.6) | 16(25.4) | 52(41.3) | 30(31.2) | |
| AA | 105(61) | 69(61.1) | 56(67.5) | 118(58.4) | 44(69.8) | 68(54) | 62(64.6) | |
| 0.229 | 0.135 | 0.234 | ||||||
|
| CC | 27(15.6) | 21(18.6) | 11(13.3) | 37(18.2) | 11(17.2) | 20(15.9) | 17(17.7) |
| CT | 88(50.9) | 47(41.6) | 36(43.4) | 99(48.8) | 26(40.6) | 64(50.8) | 45(46.9) | |
| TT | 58(33.5) | 45(39.8) | 36(43.4) | 67(33) | 27(42.2) | 42(33.3) | 34(35.4) | |
| 0.307 | 0.224 | 0.738 | ||||||
Notes.
X2 text.
Genotypic model analysis of relationship between SNPs and steroid-induced ONFH risk.
For genotypic model analysis, five different genetic models were used to more deeply analyze the associations between the SNPs and the risk of steroid-induced ONFH. Bold values are statistically different (p ≤ 0.05).
|
| C/C | 162(52.8%) | 173(60.7%) | 1.00 | 1.00 | |||
| Codominant | C/T | 122(39.7%) | 101(35.4%) | 0.78(0.55–1.09) | 0.054 | 0.78(0.55–1.11) | 0.1 | |
| T/T | 23(7.5%) | 11(3.9%) | 0.45(0.21–0.95) | 0.48(0.22–1.07) | ||||
| Dominant | C/C | 162(52.8%) | 173(60.7%) | 1.00 | 0.052 | 1.00 | 0.077 | |
| C∕T − T∕T | 145(47.2%) | 112(39.3%) | 0.72(0.52–1.00) | 0.73(0.52–1.03) | ||||
| Recessive | C∕C − C∕T | 284(92.5%) | 274(96.1%) | 1.00 | 0.055 | 1.00 | 0.11 | |
| T/T | 23(7.5%) | 11(3.9%) | 0.50(0.24–1.04) | 0.53(0.25–1.16) | ||||
| Log-additive | — | — | — | |||||
|
| G/G | 162(52.8%) | 173(60.7%) | 1.00 | 1.00 | |||
| Codominant | A/G | 122(39.7%) | 99(34.7%) | 0.76 (0.54–1.07) | 0.093 | 0.77(0.54–1.09) | 0.13 | |
| A/A | 23(7.5%) | 13 (4.6%) | 0.53 (0.26–1.08) | 0.53(0.25–1.14) | ||||
| Dominant | G/G | 162 (52.8%) | 173 (60.7%) | 1.00 | 0.052 | 1.00 | 0.071 | |
| A∕G − A∕A | 145 (47.2%) | 112 (39.3%) | 0.72 (0.52–1.00) | 0.73(0.52–1.03) | ||||
| Recessive | G∕G − A∕G | 284 (92.5%) | 272 (95.4%) | 1.00 | 0.13 | 1.00 | 0.16 | |
| A/A | 23 (7.5%) | 13 (4.6%) | 0.59 (0.29–1.19) | 0.59(0.28–1.25) | ||||
| Log-additive | — | — | — | |||||
|
| A/A | 163 (52.8%) | 171 (59.8%) | 1.00 | 1.00 | |||
| Codominant | G/A | 123 (39.8%) | 103 (36%) | 0.80(0.57–1.12) | 0.1 | 0.79(0.55–1.13) | 0.11 | |
| G/G | 23 (7.4%) | 12 (4.2%) | 0.50(0.24–1.03) | 0.48(0.22–1.05) | ||||
| Dominant | A/A | 163 (52.8%) | 171 (59.8%) | 1.00 | 0.084 | 1.00 | 0.088 | |
| G∕A − G∕G | 146 (47.2%) | 115 (40.2%) | 0.75(0.54–1.04) | 0.74(0.53–1.05) | ||||
| Recessive | A∕A − G∕A | 286 (92.6%) | 274 (95.8%) | 1.00 | 0.089 | 1.00 | 0.096 | |
| G/G | 23 (7.4%) | 12 (4.2%) | 0.54(0.27–1.12) | 0.53(0.25–1.14) | ||||
| Log-additive | — | — | — | |||||
|
| A/A | 159 (51.6%) | 174 (61%) | 1.00 | 1.00 | |||
| Codominant | C/A | 126 (40.9%) | 98 (34.4%) | 0.71(0.51–1.00) | 0.047 | 0.73(0.51–1.05) | 0.089 | |
| C/C | 23 (7.5%) | 13 (4.6%) | 0.52(0.25–1.05) | 0.53(0.25–1.12) | ||||
| Dominant | A/A | 159 (51.6%) | 174 (61%) | 1.00 | 1.00 | |||
| C∕A − C∕C | 149 (48.4%) | 111 (39%) | ||||||
| Recessive | A∕A − C∕A | 285 (92.5%) | 272 (95.4%) | 1.00 | 0.14 | 1.00 | 0.16 | |
| C/C | 23 (7.5%) | 13 (4.6%) | 0.59(0.29–1.19) | 0.59(0.28–1.25) | ||||
| Log-additive | — | — | — | |||||
|
| T/T | 85 (27.7%) | 103 (36%) | 1.00 | 1.00 | |||
| Codominant | T/C | 159 (51.8%) | 135 (47.2%) | 0.70(0.49–1.01) | 0.083 | 0.77(0.52–1.13) | 0.29 | |
| C/C | 63 (20.5%) | 48 (16.8%) | 0.63(0.39–1.01) | 0.71(0.43–1.17) | ||||
| Dominant | T/T | 85 (27.7%) | 103 (36%) | 1.00 | 1.00 | 0.12 | ||
| T∕C − C∕C | 222 (72.3%) | 183 (64%) | 0.75(0.52–1.08) | |||||
| Recessive | T∕T − T∕C | 244 (79.5%) | 238 (83.2%) | 1.00 | 0.24 | 1.00 | 0.43 | |
| C/C | 63 (20.5%) | 48 (16.8%) | 0.78(0.52–1.18) | 0.84(0.54–1.30) | ||||
| Log-additive | — | — | — | 0.83(0.65–1.06) | 0.14 | |||
Notes.
p value was adjusted by age.
Figure 1Linkage disequilibrium (LD) analysis of the SNPs on TIMP-4.
Red squares display statistically significant associations between a pair of SNPs, as measured by D’; darker shades of red indicate higher D’.
The haplotype frequencies of TIMP4 polymorphisms and their association with steroid-induced ONFH risk in case and control subjects.
Compared with the “CCGAAA” wild-type, the “TCAGAC” sequence was associated with a decreased risk of steroid-induced ONFH (OR = 0.71, 95% CI [0.53–0.95], p = 0.021; adjusted OR = 0.73, 95% CI [0.54–0.99], p = 0.04), and the “CCGGAA” sequence was also found to be associated with decreased risk after adjustment (OR = 0.31, 95% CI [0.10–0.98], P = 0.046).
| 1 | C | C | G | A | A | A | 0.625 | 0.557 | 1.00 | — | 1.00 | — |
| 2 | T | C | A | G | A | C | 0.208 | 0.254 | ||||
| 3 | C | T | G | A | G | A | 0.090 | 0.105 | 0.72(0.48–1.09) | 0.12 | 0.76(0.50–1.16) | 0.21 |
| 4 | C | T | G | A | A | A | 0.051 | 0.039 | 1.12(0.64–1.96) | 0.68 | 1.23(0.68–2.21) | 0.49 |
| 5 | C | C | G | G | A | A | 0.009 | 0.020 | 0.34(0.11–1.05) | 0.062 | ||