Literature DB >> 28081445

Bringing the Dynamic Microbiome to Life with Animations.

Yoshiki Vázquez-Baeza1, Antonio Gonzalez2, Larry Smarr3, Daniel McDonald2, James T Morton1, Jose A Navas-Molina1, Rob Knight4.   

Abstract

Our bodies and natural environment contain complex microbial communities, colloquially termed microbiomes. We previously created a web-based application, EMPeror, for visualizing ordinations derived from comparisons of these microbiome communities. We have now improved EMPeror to create interactive animations that connect successive samples to highlight patterns over time.
Copyright © 2017 Elsevier Inc. All rights reserved.

Mesh：

Year:  2017        PMID： 28081445     DOI： 10.1016/j.chom.2016.12.009

Source DB:  PubMed          Journal:  Cell Host Microbe        ISSN： 1931-3128            Impact factor:   21.023


  27 in total

1.  Metagenome Across a Geochemical Gradient of Indian Stone Ruins Found at Historic Sites in Tamil Nadu, India.

Authors:  Nathaniel J Ennis; Dhanasekaran Dharumaduri; Julia G Bryce; Louis S Tisa
Journal:  Microb Ecol       Date:  2020-09-12       Impact factor: 4.552

2.  Differential Activation of Hepatic Invariant NKT Cell Subsets Plays a Key Role in Progression of Nonalcoholic Steatohepatitis.

Authors:  Igor Maricic; Idania Marrero; Akiko Eguchi; Ryota Nakamura; Casey D Johnson; Suryasarathi Dasgupta; Carolyn D Hernandez; Phirum Sam Nguyen; Austin D Swafford; Rob Knight; Ariel E Feldstein; Rohit Loomba; Vipin Kumar
Journal:  J Immunol       Date:  2018-10-15       Impact factor: 5.422

3.  A single, peri-operative antibiotic can persistently alter the post-operative gut microbiome after Roux-en-Y gastric bypass.

Authors:  Deemantha G Fernando; Fatima L Saravia; Samantha N Atkinson; Matthew Barron; John R Kirby; Tammy L Kindel
Journal:  Surg Endosc       Date:  2022-06-29       Impact factor: 3.453

4.  Cecal microbiota of feedlot cattle fed a four-species Bacillus supplement.

Authors:  Luke K Fuerniss; Kelly K Kreikemeier; Lynn D Reed; Matt D Cravey; Bradley J Johnson
Journal:  J Anim Sci       Date:  2022-10-01       Impact factor: 3.338

5.  Host Age Prediction from Fecal Microbiota Composition in Male C57BL/6J Mice.

Authors:  Adrian Low; Melissa Soh; Sou Miyake; Henning Seedorf
Journal:  Microbiol Spectr       Date:  2022-06-08

6.  Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase.

Authors:  Igor Sfiligoi; George Armstrong; Antonio Gonzalez; Daniel McDonald; Rob Knight
Journal:  mSystems       Date:  2022-05-31       Impact factor: 7.324

7.  Gut Microbiome Critically Impacts PCB-induced Changes in Metabolic Fingerprints and the Hepatic Transcriptome in Mice.

Authors:  Joe Jongpyo Lim; Xueshu Li; Hans-Joachim Lehmler; Dongfang Wang; Haiwei Gu; Julia Yue Cui
Journal:  Toxicol Sci       Date:  2020-09-01       Impact factor: 4.849

8.  Fecal microbiota composition associates with the capacity of human peripheral blood monocytes to differentiate into immunogenic dendritic cells in vitro.

Authors:  Dušan Radojević; Sergej Tomić; Dušan Mihajlović; Maja Tolinački; Bojan Pavlović; Dragana Vučević; Svetlana Bojić; Nataša Golić; Miodrag Čolić; Jelena Đokić
Journal:  Gut Microbes       Date:  2021 Jan-Dec

9.  Characterization of the cutaneous mycobiota in Persian cats with severe dermatophytosis.

Authors:  Alexandra N Myers; Caitlin E Older; Alison B Diesel; Sara D Lawhon; Aline Rodrigues Hoffmann
Journal:  Vet Dermatol       Date:  2021-05-25       Impact factor: 1.867

10.  Maternal cecal microbiota transfer rescues early-life antibiotic-induced enhancement of type 1 diabetes in mice.

Authors:  Xue-Song Zhang; Yue Sandra Yin; Jincheng Wang; Thomas Battaglia; Kimberly Krautkramer; Wei Vivian Li; Jackie Li; Mark Brown; Meifan Zhang; Michelle H Badri; Abigail J S Armstrong; Christopher M Strauch; Zeneng Wang; Ina Nemet; Nicole Altomare; Joseph C Devlin; Linchen He; Jamie T Morton; John Alex Chalk; Kelly Needles; Viviane Liao; Julia Mount; Huilin Li; Kelly V Ruggles; Richard A Bonneau; Maria Gloria Dominguez-Bello; Fredrik Bäckhed; Stanley L Hazen; Martin J Blaser
Journal:  Cell Host Microbe       Date:  2021-07-21       Impact factor: 31.316
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