Literature DB >> 28080059

A Computational Approach for Modeling Neutron Scattering Data from Lipid Bilayers.

Jan-Michael Y Carrillo, John Katsaras1, Bobby G Sumpter, Rana Ashkar.   

Abstract

Biological cell membranes are responsible for a range of structural and dynamical phenomena crucial, which are crucial to a cell's well-being and its associated functions. Due to the complexity of cell membranes, lipid bilayer systems are often used as biomimetic models. These systems have led to significant insights into vital membrane phenomena such as domain formation, passive permeation, and protein insertion. Experimental observations of membrane structure and dynamics are, however, limited in resolution, both spatial and temporal. Importantly, computer simulations are starting to play a more prominent role in interpreting experimental results, enabling a molecular understanding of lipid membranes. In particular, the synergy between scattering experiments and simulations offers opportunities for new discoveries in membrane physics, as the length and time scales probed by molecular dynamics (MD) simulations parallel those of experiments. Here, we describe a coarse-grained MD simulation approach that mimics neutron scattering data from large unilamellar lipid vesicles over a range of bilayer rigidities. Specifically, we simulate vesicle form factors and membrane thickness fluctuations determined from small angle neutron scattering (SANS) and neutron spin echo (NSE) experiments, respectively. Our simulations accurately reproduce trends from experiments and lay the groundwork for studies of more complex membrane systems.

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Year:  2017        PMID: 28080059     DOI: 10.1021/acs.jctc.6b00968

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  4 in total

1.  A combined molecular/continuum-modeling approach to predict the small-angle neutron scattering of curved membranes.

Authors:  Mitchell W Dorrell; Andrew H Beaven; Alexander J Sodt
Journal:  Chem Phys Lipids       Date:  2020-10-06       Impact factor: 3.329

2.  How cholesterol stiffens unsaturated lipid membranes.

Authors:  Saptarshi Chakraborty; Milka Doktorova; Trivikram R Molugu; Frederick A Heberle; Haden L Scott; Boris Dzikovski; Michihiro Nagao; Laura-Roxana Stingaciu; Robert F Standaert; Francisco N Barrera; John Katsaras; George Khelashvili; Michael F Brown; Rana Ashkar
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-25       Impact factor: 11.205

Review 3.  Biomembrane Structure and Material Properties Studied With Neutron Scattering.

Authors:  Jacob J Kinnun; Haden L Scott; Rana Ashkar; John Katsaras
Journal:  Front Chem       Date:  2021-04-27       Impact factor: 5.221

4.  Effect of gold nanoparticle incorporation into oil-swollen surfactant lamellar membranes.

Authors:  Michihiro Nagao; Robert Bradbury; Siyam M Ansar; Christopher L Kitchens
Journal:  Struct Dyn       Date:  2020-12-15       Impact factor: 2.920

  4 in total

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