Literature DB >> 28067340

Ultra-filtration of human serum for improved quantitative analysis of low molecular weight biomarkers using ATR-IR spectroscopy.

Franck Bonnier1, Hélène Blasco, Clément Wasselet, Guillaume Brachet, Renaud Respaud, Luis Felipe C S Carvalho, Dominique Bertrand, Matthew J Baker, Hugh J Byrne, Igor Chourpa.   

Abstract

Infrared spectroscopy is a reliable, rapid and cost effective characterisation technique, delivering a molecular finger print of the sample. It is expected that its sensitivity would enable detection of small chemical variations in biological samples associated with disease. ATR-IR is particularly suitable for liquid sample analysis and, although air drying is commonly performed before data collection, just a drop of human serum is enough for screening and early diagnosis. However, the dynamic range of constituent biochemical concentrations in the serum composition remains a limiting factor to the reliability of the technique. Using glucose as a model spike in human serum, it has been demonstrated in the present study that fractionating the serum prior to spectroscopic analysis can considerably improve the precision and accuracy of quantitative models based on the partial least squares regression algorithm. By depleting the abundant high molecular weight proteins, which otherwise dominate the spectral signatures collected, the ability to monitor changes in the concentrations of the low molecular weight constituents is enhanced. The Root Mean Square Error for the Validation set (RMSEV) has been improved by a factor of 5 following human serum processing with an average relative error in the predictive values below 1% being achieved. Moreover, the approach is easily transferable to different bodily fluids, which would support the development of more efficient and suitable clinical protocols for exploration of vibrational spectroscopy based ex vivo diagnostic tools.

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Year:  2017        PMID: 28067340     DOI: 10.1039/c6an01888b

Source DB:  PubMed          Journal:  Analyst        ISSN: 0003-2654            Impact factor:   4.616


  7 in total

1.  Field-resolved infrared spectroscopy of biological systems.

Authors:  Ioachim Pupeza; Marinus Huber; Michael Trubetskov; Wolfgang Schweinberger; Syed A Hussain; Christina Hofer; Kilian Fritsch; Markus Poetzlberger; Lenard Vamos; Ernst Fill; Tatiana Amotchkina; Kosmas V Kepesidis; Alexander Apolonski; Nicholas Karpowicz; Vladimir Pervak; Oleg Pronin; Frank Fleischmann; Abdallah Azzeer; Mihaela Žigman; Ferenc Krausz
Journal:  Nature       Date:  2020-01-01       Impact factor: 49.962

2.  ATR-IR Spectroscopy Application to Diagnostic Screening of Advanced Endometriosis.

Authors:  Izabela Kokot; Sylwester Mazurek; Agnieszka Piwowar; Roman Szostak; Marcin Jędryka; Ewa Maria Kratz
Journal:  Oxid Med Cell Longev       Date:  2022-06-06       Impact factor: 7.310

Review 3.  Potential of Raman spectroscopy for the analysis of plasma/serum in the liquid state: recent advances.

Authors:  Drishya Rajan Parachalil; Jennifer McIntyre; Hugh J Byrne
Journal:  Anal Bioanal Chem       Date:  2020-01-03       Impact factor: 4.142

4.  Development of high-throughput ATR-FTIR technology for rapid triage of brain cancer.

Authors:  Holly J Butler; Paul M Brennan; James M Cameron; Duncan Finlayson; Mark G Hegarty; Michael D Jenkinson; David S Palmer; Benjamin R Smith; Matthew J Baker
Journal:  Nat Commun       Date:  2019-10-08       Impact factor: 14.919

5.  Mechanochemical Preparation, Characterization and Biological Activity of Stable CuS Nanosuspension Capped by Bovine Serum Albumin.

Authors:  Martin Stahorský; Zdenka Lukáčová Bujňáková; Erika Dutková; Martin Kello; Bohdan Mahlovanyi; Yaroslav Shpotyuk; Nina Daneu; Jelena Trajić; Matej Baláž
Journal:  Front Chem       Date:  2022-02-15       Impact factor: 5.221

6.  Rapid Discrimination of Neuromyelitis Optica Spectrum Disorder and Multiple Sclerosis Using Machine Learning on Infrared Spectra of Sera.

Authors:  Youssef El Khoury; Marie Gebelin; Jérôme de Sèze; Christine Patte-Mensah; Gilles Marcou; Alexandre Varnek; Ayikoé-Guy Mensah-Nyagan; Petra Hellwig; Nicolas Collongues
Journal:  Int J Mol Sci       Date:  2022-03-03       Impact factor: 5.923

7.  Improving Vibrational Spectroscopy Prospects in Frontline Clinical Diagnosis: Fourier Transform Infrared on Buccal Mucosa Cancer.

Authors:  Edward Duckworth; Arti Hole; Atul Deshmukh; Pankaj Chaturvedi; Murali Krishna Chilakapati; Benjamin Mora; Debdulal Roy
Journal:  Anal Chem       Date:  2022-09-26       Impact factor: 8.008

  7 in total

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