| Literature DB >> 28065932 |
Paweł Szczeblewski1, Tomasz Laskowski1, Bartosz Kubacki1, Marta Dziergowska1, Magda Liczmańska1, Jakub Grynda1, Paweł Kubica2, Agata Kot-Wasik2, Edward Borowski1.
Abstract
In the class of polyene macrolides, there is a subgroup of aromatic heptaenes, which exhibit the highest antifungal activity within this type of antibiotics. Yet, due to their complex nature, aromatic heptaenes were not extensively studied and their potential as drugs is currently underexploited. Moreover, there are many inconsistencies in the literature regarding the composition and the structures of the individual components of the aromatic heptaene complexes. Inspired by one of such cases, herein we conducted the analytical studies on ascosin, candicidin and levorin using HPLC-DAD-(ESI)Q-TOF techniques. The resulting chromatograms and the molecular masses of the individual components of these three complexes strongly indicated that the major components of ascosin, candicidin and levorin are structurally identical. In order to validate these results, the main component of previously structurally uncharacterized ascosin was derivatized, isolated and subjected to 2D NMR studies. The resulting structure of the ascosin's main component, herein named ascosin A2, was shown to be identical with the earlier reported structures of the main components of candicidin and levorin complexes: candicidin D and levorin A2. In the end, all the structural knowledge regarding these three antibiotic complexes was gathered, systematized and completed, and the new nomenclature was proposed.Entities:
Mesh:
Substances:
Year: 2017 PMID: 28065932 PMCID: PMC5220287 DOI: 10.1038/srep40158
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1The structure of candicidin D, the main component of the candicidin complex.
Figure 2The structures of levorin A1 and A3 with partially defined stereochemistry.
Figure 3Superimposed LC-UV-VIS chromatograms of ascosin, candicidin and levorin complexes.
Chromatographic conditions: column Agilent Eclipse XDB-C18, (150 mm × 4.6 mm, 5 μm). Mobile phase composition: 39% acetonitrile/61% ammonium acetate buffer (5.5 mmol, pH = 4.5), v/v; at a flow rate of 0.6 mL/min; inj. volume = 10 μL. Detection at 380 nm, room temperature. Asterisk refers to one of the products of photochemical isomerisation of the native components.
The resulting m/z values of the [M + H]+ ions of the major components of the studied complexes.
| Retention time of the major component [min] | Molecular formula | Monoisotopic mass calculated for ion of [M + H]+ type | Empirical monoisotopic mass obtained for ion of [M + H]+ type | |||||
|---|---|---|---|---|---|---|---|---|
| Ascosin | Candicidin | Levorin | ||||||
| [M + H]+ | ∆ [ppm] | [M + H]+ | ∆ [ppm] | [M + H]+ | ∆ [ppm] | |||
| 21.4 | C59H86O18N2 | 1111.59479 | 1111.5933 | 1.49 | 1111.5930 | 1.79 | 1111.5926 | 2.19 |
| 26.6 | C59H84O18N2 | 1109.57914 | 1109.5788 | 0.34 | 1109.5789 | 0.24 | 1109.5763 | 2.84 |
| 34.4 | C59H84O17N2 | 1093.58423 | 1093.5838 | 0.43 | 1093.5822 | 2.03 | 1093.5792 | 5.03 |
The composition of the ascosin, candicidin and levorin antibiotic complexes.
| Component of the complex | A3 | A2 (D) | A1 | |
|---|---|---|---|---|
| Molecular formula | C59H86O18N2 | C59H84O18N2 | C59H84O17N2 | |
| Monoisotopic molecular mass [u] | 1110.59 | 1108.57 | 1092.58 | |
| Retention time [min] | 21.4 | 26.6 | 34.4 | |
| Contribution [%] | Ascosin | 20% | 41% | 12% |
| Candicidin | 21% | 28% | 15% | |
| Levorin | 17% | 37% | 11% | |
1H NMR data for 3′-N-acetylascosin A2 methyl ester (A2*).
| Proton no. | 1H δ (p.p.m.) | JH,H (Hz) | ROE contacts |
|---|---|---|---|
| 2a | 3.59 | 14.3 (2b) | 2b |
| 2b | 3.68 | 14.3 (2a) | 2a |
| 4a | 2.54 | 15.2 (4b), 5.3 (5) | 5, 4b |
| 4b | 2.63 | 15.2 (4a), 10.7 (5) | 4a |
| 5 (2H) | 1.92 | 5.3 (4a), 10.7 (4b), 7.6 (6) | 4a, 6 |
| 6 (2H) | 2.42 | 7.6 (5) | 5 |
| 8a | 2.43 | 14.5 (8b), 4.2 (9) | 8b, 9, 10a |
| 8b | 2.72 | 14.5 (8a), 9.0 (9) | 8a, 10b, 11 |
| 9 | 4.65 | 4.2 (8a), 9.0 (8b), 3.6 (10a), 8.4 (10b) | 8a, 10a, 11, 26 |
| 10a | 1.53 | 3.6 (9), 13.7 (10b), 3.6 (11) | 8a, 9, 10b, 11 |
| 10b | 1.77 | 8.4 (9), 13.7 (10a), 9.1 (11) | 8b, 10a, 11 |
| 11 | 4.27 | 3.6 (10a), 9.1 (10b), 4.0 (12a), 9.1 (12b) | 8b, 9, 10a, 10b, 13, 24, 26 |
| 12a | 1.52 | 4.0 (11), 14.7 (12b), 3.5 (13) | 12b, 13 |
| 12b | 1.79 | 9.1 (11), 14.7 (12a), 10.3 (13) | 12a, 14b |
| 13 | 4.75 | 3.5 (12a), 10.1 (12b), 3.5 (14a), 10.3 (14b) | 11, 12a, 14a, 22, 24 |
| 14a | 1.80 | 14.8 (14b), 3.5 (13) | 13, 14b, 16a |
| 14b | 2.00 | 14.8 (14a), 10.1 (13) | 12b, 14a, 16b |
| 16a | 1.78 | 13.5 (16b), 8.3 (17) | 14a, 18, 16b |
| 16b | 2.55 | 13.5 (16a), 4.6 (17) | 14b, 17, 16a |
| 17 | 5.02 | 8.3 (16a), 4.6 (16b), 10.5 (18) | 16b |
| 18 | 2.85 | 10.5 (17), 10.5 (19) | 16a, 19, 20a, 21 |
| 19 | 5.00 | 10.5 (18), 6.4 (20a), 2.3 (20b) | 18, 2’ |
| 20a | 2.11 | 6.4 (19), 14.9 (20b), 1.3 (21) | 18, 20b, 21 |
| 20b | 2.38 | 2.3 (19), 14.9 (20a), 5.1 (21) | 20a, 21, 1′ |
| 21 | 4.93 | 1.3 (20a), 5.1 (20b), 7.5 (22) | 18, 20a, 20b, 22, 23, 1’ |
| 22 | 6.37 | 7.5 (21), 15.0 (23) | 13, 21, 24 |
| 23 | 6.47 | 15.0 (22),11.0 (24) | 21, 25 |
| 24 | 6.64 | 11.0 (23), 16.0 (25) | 11, 13, 22, 26 |
| 25 | 6.94 | 16.0 (24), 11.0 (26) | 23, 28 |
| 26 | 6.46 | 11.0 (25), 11.0 (27) | 9, 11, 24, 27 |
| 27 | 6.93 | 11.0 (26), 11.0 (28) | 26, 30 |
| 28 | 6.75 | 11.0 (27), 11.0 (29) | 25, 29 |
| 29 | 6.32 | 11.0 (28), 11.0 (30) | 28, 31 |
| 30 | 7.18 | 11.0 (29), 16.0 (31) | 27, 32 |
| 31 | 6.47 | 16.0 (30), 11.0 (32) | 29 |
| 32 | 6.55 | 11.0 (31), 15.0 (33) | 30, 34 |
| 33 | 6.40 | 15.0 (32), 10.0 (34) | 35 |
| 34 | 6.23 | 10.0 (33), 15.0 (35) | 32, 36 |
| 35 | 5.64 | 15.3 (34), 9.0 (36) | 33, 36, 37, Me36 |
| 36 | 2.57 | 9.0 (35), 6.5 (Me36), 9.7 (37) | 34, 35, Me36 |
| 37 | 5.06 | 9.7 (36), 3.3 (38) | 35, 38, 39a, Me36 |
| 38 | 2.02 | 3.3 (37), 6.9 (Me38), 4.2 (39a), 7.6 (39b) | 37, Me38 |
| 39a | 1.37 | 4.2 (38), 16.3 (39b), 11.1 (40) | 37, 39b, Me38 |
| 39b | 1.79 | 7.6 (38),16.3 (39a), 4.0 (40), | 39a, 40, 41, 42a, Me40 |
| 40 | 2.00 | 11.1 (39a), 4.0 (39b), 7.3 (Me40), 8.7 (41) | 39b, 41, 42b, Me40 |
| 41 | 4.52 | 8.7 (40), 4.5 (42a), 8.4 (42b) | 39b, 40, 42a, 42b, Me38, B |
| 42a | 3.15 | 4.5 (41), 15.6 (42b) | 39b, 41, 42b, B |
| 42b | 3.40 | 8.4 (41), 15.6 (42a) | 40, 41, 42b, B |
| Me36 | 0.99 | 6.5 (36) | 35, 36, 37 |
| Me38 | 1.12 | 6.9 (38) | 38, 39a, 41 |
| Me40 | 1.01 | 7.3 (40) | 39b, 40 |
| COOMe | 3.79 | — | 6′ |
| A (2H) | 6.97 | 8.7 (B) | B |
| B (2H) | 8.16 | 8.7 (A) | 41, 42a, 42b, A |
| 1′ | 4.99 | 1.0 (2′) | 2′, 3′, 5′, 20b, 21 |
| 2′ | 4.45 | 1.0 (1′), 4.2 (3′) | 1′, 3′, 19 |
| 3′ | 4.69 | 4.2 (2′), 10.0 (4′) | 1′, 2′, 5′ |
| 4′ | 4.05 | 10.0 (3′), 9.4 (5′) | 5′, 6′, NH |
| 5′ | 3.77 | 9.4 (4′), 6.7 (6′) | 1′, 3′, 4′, 6′ |
| 6′ | 1.59 | 6.7 (5′) | 4′, 5′, COOMe |
| NH | 8.92 | — | 4′, COMe |
| COMe | 2.11 | — | NH |
13C NMR data for 3′-N-acetylascosin A2 methyl ester (A2*).
| 13C atom no. | 13C δ (p.p.m.) | 13C atom no. | 13C δ (p.p.m.) |
|---|---|---|---|
| 132.9 | |||
| 1 | 166.9 | 133.9 | |
| 2 | 49.0 | 132.2 | |
| 3 | 202.0 | 137.9 | |
| 4 | 42.5 | 40.3 | |
| 5 | 17.5 | 80.9 | |
| 6 | 43.0 | 31.2 | |
| 7 | 209.4 | 37.4 | |
| 8 | 50.6 | 37.0 | |
| 9 | 56.0 | 71.5 | |
| 10 | 43.9 | 42.1 | |
| 11 | 72.4 | 198.0 | |
| 12 | 44.1 | 16.5 | |
| 13 | 68.9 | 15.7 | |
| 14 | 46.9 | 12.3 | |
| 15 | 98.0 | 173.9 | |
| 16 | 45.0 | COO | 51.7 |
| 17 | 66.2 | ||
| 18 | 58.6 | 113.2 | |
| 19 | 68.1 | 131.3 | |
| 20 | 37.7 | 154.2 | |
| 21 | 76.1 | 126.7 | |
| 22 | 137.5 | ||
| 23 | 131.5 | ||
| 24 | 134.7 | 98.5 | |
| 25 | 127.9 | 70.8 | |
| 26 | 132.9 | 55.9 | |
| 27 | 125.1 | 72.2 | |
| 28 | 124.9 | 74.8 | |
| 29 | 130.3 | 18.4 | |
| 30 | 132.4 | NH | 170.8 |
| 31 | 134.2 | NHCO | 22.8 |
Figure 4The structures of the three major antibiotics of the ascosin, candicidin and levorin complexes.