Literature DB >> 28065669

The Role of Chromatin Structure in Gene Regulation of the Human Malaria Parasite.

Gayani Batugedara1, Xueqing M Lu1, Evelien M Bunnik2, Karine G Le Roch3.   

Abstract

The human malaria parasite, Plasmodium falciparum, depends on a coordinated regulation of gene expression for development and propagation within the human host. Recent developments suggest that gene regulation in the parasite is largely controlled by epigenetic mechanisms. Here, we discuss recent advancements contributing to our understanding of the mechanisms controlling gene regulation in the parasite, including nucleosome landscape, histone modifications, and nuclear architecture. In addition, various processes involved in regulation of parasite-specific genes and gene families are examined. Finally, we address the use of epigenetic processes as targets for novel antimalarial therapies. Collectively, these topics highlight the unique biology of P. falciparum, and contribute to our understanding of mechanisms regulating gene expression in this deadly parasite.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Plasmodium; chromatin; epigenetics; gene regulation; malaria; nucleosome

Mesh:

Substances:

Year:  2017        PMID: 28065669      PMCID: PMC5410391          DOI: 10.1016/j.pt.2016.12.004

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  125 in total

1.  Looping and interaction between hypersensitive sites in the active beta-globin locus.

Authors:  Bas Tolhuis; Robert Jan Palstra; Erik Splinter; Frank Grosveld; Wouter de Laat
Journal:  Mol Cell       Date:  2002-12       Impact factor: 17.970

2.  Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements.

Authors:  Josée Dostie; Todd A Richmond; Ramy A Arnaout; Rebecca R Selzer; William L Lee; Tracey A Honan; Eric D Rubio; Anton Krumm; Justin Lamb; Chad Nusbaum; Roland D Green; Job Dekker
Journal:  Genome Res       Date:  2006-09-05       Impact factor: 9.043

3.  Mapping the 3D genome: Aiming for consilience.

Authors:  Job Dekker
Journal:  Nat Rev Mol Cell Biol       Date:  2016-11-21       Impact factor: 94.444

4.  Genome-wide analysis of heterochromatin associates clonally variant gene regulation with perinuclear repressive centers in malaria parasites.

Authors:  Jose-Juan Lopez-Rubio; Liliana Mancio-Silva; Artur Scherf
Journal:  Cell Host Microbe       Date:  2009-02-19       Impact factor: 21.023

Review 5.  Long nonoding RNAs in the X-inactivation center.

Authors:  Emily Maclary; Michael Hinten; Clair Harris; Sundeep Kalantry
Journal:  Chromosome Res       Date:  2013-12       Impact factor: 5.239

6.  Transcriptional variation in the malaria parasite Plasmodium falciparum.

Authors:  Núria Rovira-Graells; Archna P Gupta; Evarist Planet; Valerie M Crowley; Sachel Mok; Lluís Ribas de Pouplana; Peter R Preiser; Zbynek Bozdech; Alfred Cortés
Journal:  Genome Res       Date:  2012-03-13       Impact factor: 9.043

Review 7.  Recent advances in malaria genomics and epigenomics.

Authors:  Sebastian Kirchner; B Joanne Power; Andrew P Waters
Journal:  Genome Med       Date:  2016-09-07       Impact factor: 11.117

8.  Plasmodium falciparum heterochromatin protein 1 binds to tri-methylated histone 3 lysine 9 and is linked to mutually exclusive expression of var genes.

Authors:  Karla Pérez-Toledo; Ana Paola Rojas-Meza; Liliana Mancio-Silva; Nora Adriana Hernández-Cuevas; Dulce Maria Delgadillo; Miguel Vargas; Santiago Martínez-Calvillo; Artur Scherf; Rosaura Hernandez-Rivas
Journal:  Nucleic Acids Res       Date:  2009-03-06       Impact factor: 16.971

9.  Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum.

Authors:  Sophie C Oehring; Ben J Woodcroft; Suzette Moes; Johanna Wetzel; Olivier Dietz; Andreas Pulfer; Chaitali Dekiwadia; Pascal Maeser; Christian Flueck; Kathrin Witmer; Nicolas M B Brancucci; Igor Niederwieser; Paul Jenoe; Stuart A Ralph; Till S Voss
Journal:  Genome Biol       Date:  2012-11-26       Impact factor: 13.583

10.  The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum.

Authors:  Evelien M Bunnik; Gayani Batugedara; Anita Saraf; Jacques Prudhomme; Laurence Florens; Karine G Le Roch
Journal:  Genome Biol       Date:  2016-07-05       Impact factor: 13.583

View more
  14 in total

1.  DNA-RNA interactions are critical for chromosome condensation in Escherichia coli.

Authors:  Zhong Qian; Victor B Zhurkin; Sankar Adhya
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-30       Impact factor: 11.205

2.  Genome-wide landscape of ApiAP2 transcription factors reveals a heterochromatin-associated regulatory network during Plasmodium falciparum blood-stage development.

Authors:  Xiaomin Shang; Changhong Wang; Yanting Fan; Gangqiang Guo; Fei Wang; Yuemeng Zhao; Fei Sheng; Jianxia Tang; Xiaoqin He; Xinyu Yu; Meihua Zhang; Guoding Zhu; Shigang Yin; Jianbing Mu; Richard Culleton; Jun Cao; Mei Jiang; Qingfeng Zhang
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

3.  Plasmodium falciparum Drug Resistance Genes pfmdr1 and pfcrt In Vivo Co-Expression During Artemether-Lumefantrine Therapy.

Authors:  M Silva; M Malmberg; S D Otienoburu; A Björkman; B Ngasala; A Mårtensson; J P Gil; M I Veiga
Journal:  Front Pharmacol       Date:  2022-05-24       Impact factor: 5.988

4.  Inhibition of PfMYST Histone Acetyltransferase Activity Blocks Plasmodium falciparum Growth and Survival.

Authors:  Utsav Sen; Akshaykumar Nayak; Juhi Khurana; Deepu Sharma; Ashish Gupta
Journal:  Antimicrob Agents Chemother       Date:  2020-12-16       Impact factor: 5.191

Review 5.  Protein acetylation in the critical biological processes in protozoan parasites.

Authors:  Suellen Rodrigues Maran; Krista Fleck; Natália Melquie Monteiro-Teles; Tony Isebe; Pegine Walrad; Victoria Jeffers; Igor Cestari; Elton J R Vasconcelos; Nilmar Moretti
Journal:  Trends Parasitol       Date:  2021-05-12

6.  Histone 4 lysine 8 acetylation regulates proliferation and host-pathogen interaction in Plasmodium falciparum.

Authors:  Archana P Gupta; Lei Zhu; Jaishree Tripathi; Michal Kucharski; Alok Patra; Zbynek Bozdech
Journal:  Epigenetics Chromatin       Date:  2017-08-22       Impact factor: 4.954

7.  Histone methylation changes are required for life cycle progression in the human parasite Schistosoma mansoni.

Authors:  David Roquis; Aaron Taudt; Kathrin K Geyer; Gilda Padalino; Karl F Hoffmann; Nancy Holroyd; Matt Berriman; Benoît Aliaga; Cristian Chaparro; Christoph Grunau; Ronaldo de Carvalho Augusto
Journal:  PLoS Pathog       Date:  2018-05-21       Impact factor: 6.823

Review 8.  Epigenetics and Malaria Susceptibility/Protection: A Missing Piece of the Puzzle.

Authors:  Charles Arama; Jaclyn E Quin; Bourèma Kouriba; Ann-Kristin Östlund Farrants; Marita Troye-Blomberg; Ogobara K Doumbo
Journal:  Front Immunol       Date:  2018-08-03       Impact factor: 7.561

9.  Weighted Gene Co-Expression Analyses Point to Long Non-Coding RNA Hub Genes at Different Schistosoma mansoni Life-Cycle Stages.

Authors:  Lucas F Maciel; David A Morales-Vicente; Gilbert O Silveira; Raphael O Ribeiro; Giovanna G O Olberg; David S Pires; Murilo S Amaral; Sergio Verjovski-Almeida
Journal:  Front Genet       Date:  2019-09-12       Impact factor: 4.599

Review 10.  Functional genomics of simian malaria parasites and host-parasite interactions.

Authors:  Mary R Galinski
Journal:  Brief Funct Genomics       Date:  2019-09-24       Impact factor: 4.241

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.