Literature DB >> 24297756

Long nonoding RNAs in the X-inactivation center.

Emily Maclary1, Michael Hinten1, Clair Harris1, Sundeep Kalantry1.   

Abstract

The X-inactivation center is a hotbed of functional long noncoding RNAs in eutherian mammals. These RNAs are thought to help orchestrate the epigenetic transcriptional states of the two X-chromosomes in females as well as of the single X-chromosome in males. To balance X-linked gene expression between the sexes, females undergo transcriptional silencing of most genes on one of the two X-chromosomes in a process termed X-chromosome inactivation. While one X-chromosome is inactivated, the other X-chromosome remains active. Moreover, with a few notable exceptions, the originally established epigenetic transcriptional profiles of the two X-chromosomes is maintained as such through many rounds of cell division, essentially for the life of the organism. The stable and divergent transcriptional fates of the two X-chromosomes, despite residing in a shared nucleoplasm, make X-inactivation a paradigm of epigenetic transcriptional regulation. Originally proposed in 1961 by Mary Lyon, the X-inactivation hypothesis has been validated through much experimentation. In the last 25 years, the discovery and functional characterization has firmly established X-linked long noncoding RNAs as key players in choreographing X-chromosome inactivation.

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Year:  2013        PMID: 24297756      PMCID: PMC3919162          DOI: 10.1007/s10577-013-9396-2

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  105 in total

1.  Chromosomal silencing and localization are mediated by different domains of Xist RNA.

Authors:  Anton Wutz; Theodore P Rasmussen; Rudolf Jaenisch
Journal:  Nat Genet       Date:  2002-01-07       Impact factor: 38.330

2.  Epigenetic dynamics of imprinted X inactivation during early mouse development.

Authors:  Ikuhiro Okamoto; Arie P Otte; C David Allis; Danny Reinberg; Edith Heard
Journal:  Science       Date:  2003-12-11       Impact factor: 47.728

3.  Jpx RNA activates Xist by evicting CTCF.

Authors:  Sha Sun; Brian C Del Rosario; Attila Szanto; Yuya Ogawa; Yesu Jeon; Jeannie T Lee
Journal:  Cell       Date:  2013-06-20       Impact factor: 41.582

4.  Molecular coupling of Xist regulation and pluripotency.

Authors:  Pablo Navarro; Ian Chambers; Violetta Karwacki-Neisius; Corinne Chureau; Céline Morey; Claire Rougeulle; Philip Avner
Journal:  Science       Date:  2008-09-19       Impact factor: 47.728

5.  X-chromosome inactivation mosaicism in the three germ layers and the germ line of the mouse embryo.

Authors:  A McMahon; M Fosten; M Monk
Journal:  J Embryol Exp Morphol       Date:  1983-04

6.  Postmeiotic sex chromatin in the male germline of mice.

Authors:  Satoshi H Namekawa; Peter J Park; Li-Feng Zhang; James E Shima; John R McCarrey; Michael D Griswold; Jeannie T Lee
Journal:  Curr Biol       Date:  2006-04-04       Impact factor: 10.834

7.  Primary and secondary nonrandom X chromosome inactivation in early female mouse embryos carrying Searle's translocation T(X; 16)16H.

Authors:  N Takagi
Journal:  Chromosoma       Date:  1980       Impact factor: 4.316

8.  The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation.

Authors:  Di Tian; Sha Sun; Jeannie T Lee
Journal:  Cell       Date:  2010-10-29       Impact factor: 41.582

9.  Tsx produces a long noncoding RNA and has general functions in the germline, stem cells, and brain.

Authors:  Montserrat C Anguera; Weiyuan Ma; Danielle Clift; Satoshi Namekawa; Raymond J Kelleher; Jeannie T Lee
Journal:  PLoS Genet       Date:  2011-09-01       Impact factor: 5.917

10.  Dynamic relocalization of histone MacroH2A1 from centrosomes to inactive X chromosomes during X inactivation.

Authors:  T P Rasmussen; M A Mastrangelo; A Eden; J R Pehrson; R Jaenisch
Journal:  J Cell Biol       Date:  2000-09-04       Impact factor: 10.539

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  11 in total

1.  Visualizing Long Noncoding RNAs on Chromatin.

Authors:  Michael Hinten; Emily Maclary; Srimonta Gayen; Clair Harris; Sundeep Kalantry
Journal:  Methods Mol Biol       Date:  2016

2.  Functional Dissection of the m6A RNA Modification.

Authors:  Brooke Huisman; Gabriel Manske; Stephen Carney; Sundeep Kalantry
Journal:  Trends Biochem Sci       Date:  2017-01-04       Impact factor: 13.807

Review 3.  The Role of Chromatin Structure in Gene Regulation of the Human Malaria Parasite.

Authors:  Gayani Batugedara; Xueqing M Lu; Evelien M Bunnik; Karine G Le Roch
Journal:  Trends Parasitol       Date:  2017-01-05

Review 4.  Epigenetic mechanisms underlying nervous system diseases.

Authors:  Irfan A Qureshi; Mark F Mehler
Journal:  Handb Clin Neurol       Date:  2018

5.  Highly Resolved Detection of Long Non-coding RNAs In Situ.

Authors:  Megan Trotter; Clair Harris; Marissa Cloutier; Milan Samanta; Sundeep Kalantry
Journal:  Methods Mol Biol       Date:  2021

Review 6.  Shared Mechanisms for Mutually Exclusive Expression and Antigenic Variation by Protozoan Parasites.

Authors:  Francesca Florini; Joseph E Visone; Kirk W Deitsch
Journal:  Front Cell Dev Biol       Date:  2022-03-08

Review 7.  Dynamic interplay and function of multiple noncoding genes governing X chromosome inactivation.

Authors:  Minghui Yue; John Lalith Charles Richard; Yuya Ogawa
Journal:  Biochim Biophys Acta       Date:  2015-08-07

Review 8.  Unraveling the 3D genome of human malaria parasites.

Authors:  Gayani Batugedara; Karine G Le Roch
Journal:  Semin Cell Dev Biol       Date:  2018-07-27       Impact factor: 7.727

9.  Xist Exon 7 Contributes to the Stable Localization of Xist RNA on the Inactive X-Chromosome.

Authors:  Norishige Yamada; Yuko Hasegawa; Minghui Yue; Tomofumi Hamada; Shinichi Nakagawa; Yuya Ogawa
Journal:  PLoS Genet       Date:  2015-08-05       Impact factor: 5.917

Review 10.  A Single Cell but Many Different Transcripts: A Journey into the World of Long Non-Coding RNAs.

Authors:  Enrico Alessio; Raphael Severino Bonadio; Lisa Buson; Francesco Chemello; Stefano Cagnin
Journal:  Int J Mol Sci       Date:  2020-01-01       Impact factor: 5.923

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