Literature DB >> 28063650

Performing Skin Microbiome Research: A Method to the Madness.

Heidi H Kong1, Björn Andersson2, Thomas Clavel3, John E Common4, Scott A Jackson5, Nathan D Olson5, Julia A Segre6, Claudia Traidl-Hoffmann7.   

Abstract

Growing interest in microbial contributions to human health and disease has increasingly led investigators to examine the microbiome in both healthy skin and cutaneous disorders, including acne, psoriasis, and atopic dermatitis. The need for common language, effective study design, and validated methods is critical for high-quality standardized research. Features, unique to skin, pose particular challenges when conducting microbiome research. This review discusses microbiome research standards and highlights important factors to consider, including clinical study design, skin sampling, sample processing, DNA sequencing, control inclusion, and data analysis.
Copyright © 2016 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2017        PMID: 28063650      PMCID: PMC5468751          DOI: 10.1016/j.jid.2016.10.033

Source DB:  PubMed          Journal:  J Invest Dermatol        ISSN: 0022-202X            Impact factor:   8.551


  100 in total

1.  Molecular analysis of fungal microbiota in samples from healthy human skin and psoriatic lesions.

Authors:  Luciana C Paulino; Chi-Hong Tseng; Bruce E Strober; Martin J Blaser
Journal:  J Clin Microbiol       Date:  2006-08       Impact factor: 5.948

2.  Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability.

Authors:  Moran Yassour; Tommi Vatanen; Heli Siljander; Anu-Maaria Hämäläinen; Taina Härkönen; Samppa J Ryhänen; Eric A Franzosa; Hera Vlamakis; Curtis Huttenhower; Dirk Gevers; Eric S Lander; Mikael Knip; Ramnik J Xavier
Journal:  Sci Transl Med       Date:  2016-06-15       Impact factor: 17.956

3.  Vitamin B12 modulates the transcriptome of the skin microbiota in acne pathogenesis.

Authors:  Dezhi Kang; Baochen Shi; Marie C Erfe; Noah Craft; Huiying Li
Journal:  Sci Transl Med       Date:  2015-06-24       Impact factor: 17.956

4.  Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns.

Authors:  Maria G Dominguez-Bello; Elizabeth K Costello; Monica Contreras; Magda Magris; Glida Hidalgo; Noah Fierer; Rob Knight
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-21       Impact factor: 11.205

5.  Hypothesis testing and power calculations for taxonomic-based human microbiome data.

Authors:  Patricio S La Rosa; J Paul Brooks; Elena Deych; Edward L Boone; David J Edwards; Qin Wang; Erica Sodergren; George Weinstock; William D Shannon
Journal:  PLoS One       Date:  2012-12-20       Impact factor: 3.240

6.  Significant changes in the skin microbiome mediated by the sport of roller derby.

Authors:  James F Meadow; Ashley C Bateman; Keith M Herkert; Timothy K O'Connor; Jessica L Green
Journal:  PeerJ       Date:  2013-03-12       Impact factor: 2.984

7.  Archaea on human skin.

Authors:  Alexander J Probst; Anna K Auerbach; Christine Moissl-Eichinger
Journal:  PLoS One       Date:  2013-06-12       Impact factor: 3.240

8.  Cohabiting family members share microbiota with one another and with their dogs.

Authors:  Se Jin Song; Christian Lauber; Elizabeth K Costello; Catherine A Lozupone; Gregory Humphrey; Donna Berg-Lyons; J Gregory Caporaso; Dan Knights; Jose C Clemente; Sara Nakielny; Jeffrey I Gordon; Noah Fierer; Rob Knight
Journal:  Elife       Date:  2013-04-16       Impact factor: 8.140

9.  DNA extract characterization process for microbial detection methods development and validation.

Authors:  Nathan D Olson; Jayne B Morrow
Journal:  BMC Res Notes       Date:  2012-12-03

10.  Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation.

Authors:  Hilary P Browne; Samuel C Forster; Blessing O Anonye; Nitin Kumar; B Anne Neville; Mark D Stares; David Goulding; Trevor D Lawley
Journal:  Nature       Date:  2016-05-04       Impact factor: 49.962

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  50 in total

1.  Skin Ecology during Sebaceous Drought-How Skin Microbes Respond to Isotretinoin.

Authors:  William H McCoy; Elaine Otchere; Bruce A Rosa; John Martin; Caroline M Mann; Makedonka Mitreva
Journal:  J Invest Dermatol       Date:  2018-10-24       Impact factor: 8.551

Review 2.  [General aspects regarding the skin microbiome].

Authors:  R Mikolajczyk; L M Roesner
Journal:  Hautarzt       Date:  2019-06       Impact factor: 0.751

Review 3.  Perspectives in lung microbiome research.

Authors:  Imran Sulaiman; Sheeja Schuster; Leopoldo N Segal
Journal:  Curr Opin Microbiol       Date:  2020-07-02       Impact factor: 7.934

4.  [Research on the skin microbiome : Fascinating and challenging].

Authors:  R Gläser; J Harder
Journal:  Hautarzt       Date:  2017-09       Impact factor: 0.751

Review 5.  The human skin microbiome.

Authors:  Allyson L Byrd; Yasmine Belkaid; Julia A Segre
Journal:  Nat Rev Microbiol       Date:  2018-01-15       Impact factor: 60.633

6.  Alterations in Skin Microbiomes of Patients With Cirrhosis.

Authors:  Jasmohan S Bajaj; Andrew Fagan; Masoumeh Sikaroodi; Genta Kakiyama; Hajme Takei; Yordanos Degefu; William M Pandak; Phillip B Hylemon; Michael Fuchs; Binu John; Douglas M Heuman; Edith Gavis; Hiroshi Nittono; Rohan Patil; Patrick M Gillevet
Journal:  Clin Gastroenterol Hepatol       Date:  2019-03-21       Impact factor: 11.382

Review 7.  Skin Microbiota and the Cosmetic Industry.

Authors:  Maria João Carvalho; Ana L S Oliveira; Sílvia Santos Pedrosa; Manuela Pintado; Inês Pinto-Ribeiro; Ana Raquel Madureira
Journal:  Microb Ecol       Date:  2022-07-09       Impact factor: 4.552

8.  Recovering prokaryotic genomes from host-associated, short-read shotgun metagenomic sequencing data.

Authors:  Sara Saheb Kashaf; Alexandre Almeida; Julia A Segre; Robert D Finn
Journal:  Nat Protoc       Date:  2021-04-16       Impact factor: 13.491

Review 9.  A review and roadmap of the skin, lung and gut microbiota in systemic sclerosis.

Authors:  Shannon Teaw; Monique Hinchcliff; Michelle Cheng
Journal:  Rheumatology (Oxford)       Date:  2021-12-01       Impact factor: 7.580

Review 10.  [The skin microbiome-useful for diagnosis and therapy?]

Authors:  Claudia Hülpüsch; Matthias Reiger
Journal:  Hautarzt       Date:  2021-06-11       Impact factor: 0.751

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