Literature DB >> 28061019

Metabolic phenotyping of human plasma by 1 H-NMR at high and medium magnetic field strengths: a case study for lung cancer.

Evelyne Louis1, Francois-Xavier Cantrelle2, Liesbet Mesotten1,3, Gunter Reekmans4, Liene Bervoets1, Karolien Vanhove1,5, Michiel Thomeer1,6, Guy Lippens2,7, Peter Adriaensens4.   

Abstract

Accurate identification and quantification of human plasma metabolites can be challenging in crowded regions of the NMR spectrum with severe signal overlap. Therefore, this study describes metabolite spiking experiments on the basis of which the NMR spectrum can be rationally segmented into well-defined integration regions, and this for spectrometers having magnetic field strengths corresponding to 1 H resonance frequencies of 400 MHz and 900 MHz. Subsequently, the integration data of a case-control dataset of 69 lung cancer patients and 74 controls were used to train a multivariate statistical classification model for both field strengths. In this way, the advantages/disadvantages of high versus medium magnetic field strength were evaluated. The discriminative power obtained from the data collected at the two magnetic field strengths is rather similar, i.e. a sensitivity and specificity of respectively 90 and 97% for the 400 MHz data versus 88 and 96% for the 900 MHz data. This shows that a medium-field NMR spectrometer (400-600 MHz) is already sufficient to perform clinical metabolomics. However, the improved spectral resolution (reduced signal overlap) and signal-to-noise ratio of 900 MHz spectra yield more integration regions that represent a single metabolite. This will simplify the unraveling and understanding of the related, disease disturbed, biochemical pathways.
Copyright © 2017 John Wiley & Sons, Ltd. Copyright © 2017 John Wiley & Sons, Ltd.

Entities:  

Keywords:  1H, magnetic field strength; lung cancer; metabolic phenotype; nuclear magnetic resonance spectroscopy; plasma

Mesh:

Year:  2017        PMID: 28061019     DOI: 10.1002/mrc.4577

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  7 in total

Review 1.  Blood based biomarkers beyond genomics for lung cancer screening.

Authors:  Samir M Hanash; Edwin Justin Ostrin; Johannes F Fahrmann
Journal:  Transl Lung Cancer Res       Date:  2018-06

Review 2.  Unraveling the Rewired Metabolism in Lung Cancer Using Quantitative NMR Metabolomics.

Authors:  Karolien Vanhove; Elien Derveaux; Liesbet Mesotten; Michiel Thomeer; Maarten Criel; Hanne Mariën; Peter Adriaensens
Journal:  Int J Mol Sci       Date:  2022-05-17       Impact factor: 6.208

Review 3.  Next-generation metabolomics in lung cancer diagnosis, treatment and precision medicine: mini review.

Authors:  Li Yu; Kefeng Li; Xiaoye Zhang
Journal:  Oncotarget       Date:  2017-11-11

4.  Metabolomic profiling of human lung tumor tissues - nucleotide metabolism as a candidate for therapeutic interventions and biomarkers.

Authors:  Paula Moreno; Carla Jiménez-Jiménez; Martín Garrido-Rodríguez; Mónica Calderón-Santiago; Susana Molina; Maribel Lara-Chica; Feliciano Priego-Capote; Ángel Salvatierra; Eduardo Muñoz; Marco A Calzado
Journal:  Mol Oncol       Date:  2018-09-13       Impact factor: 6.603

5.  The impact of the method of extracting metabolic signal from 1H-NMR data on the classification of samples: A case study of binning and BATMAN in lung cancer.

Authors:  Trishanta Padayachee; Tatsiana Khamiakova; Evelyne Louis; Peter Adriaensens; Tomasz Burzykowski
Journal:  PLoS One       Date:  2019-02-06       Impact factor: 3.240

6.  Metabolomic, transcriptomic and genetic integrative analysis reveals important roles of adenosine diphosphate in haemostasis and platelet activation in non-small-cell lung cancer.

Authors:  Long T Hoang; Clara Domingo-Sabugo; Elizabeth S Starren; Saffron A G Willis-Owen; Deborah J Morris-Rosendahl; Andrew G Nicholson; William O C M Cookson; Miriam F Moffatt
Journal:  Mol Oncol       Date:  2019-09-30       Impact factor: 6.603

7.  Serum Metabolic Disturbances in Lung Cancer Investigated through an Elaborative NMR-Based Serum Metabolomics Approach.

Authors:  Anjana Singh; Ved Prakash; Nikhil Gupta; Ashish Kumar; Ravi Kant; Dinesh Kumar
Journal:  ACS Omega       Date:  2022-01-31
  7 in total

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