Literature DB >> 28054784

Porphyrin-Polyyne [3]- and [5]Rotaxanes.

Daniel R Kohn1, Levon D Movsisyan1, Amber L Thompson1, Harry L Anderson1.   

Abstract

Porphyrin-polyyne [3]- and [5]rotaxanes have been synthesized by condensing aldehyde-rotaxanes with pyrrole or dipyrromethane. The crystal structure of a [3]rotaxane shows that the macrocycles adopt compact conformations, holding the hexaynes near the porphyrin core, and that the phenanthroline units form intermolecular π-stacked dimers in the solid. Fluorescence spectra reveal singlet excited-state energy transfer from the threaded hexayne to the porphyrin, from the phenanthroline to the porphyrin, and from the phenanthroline to the hexayne.

Entities:  

Year:  2017        PMID: 28054784      PMCID: PMC5354311          DOI: 10.1021/acs.orglett.6b03528

Source DB:  PubMed          Journal:  Org Lett        ISSN: 1523-7052            Impact factor:   6.005


Macrocycles consisting entirely of sp-hydridized carbon are intriguing synthetic targets.[1−3] Cyclocarbons have been studied in the gas phase,[1,2,4] but they have not yet been isolated or characterized in solution, despite attempts by Diederich, Tobe, Rees, and co-workers.[1−3] Advances in active metal template synthesis[5] provide access to an expanding diversity of interlocked molecules, including threaded polyynes,[6−11] and it has been found that linear chains of sp-hybridized carbon atoms (both polyynes and cumulenes) can be stabilized by threading them through macrocycles to form rotaxanes.[11−13] As part of a project directed toward the synthesis of cyclocarbon catenanes, we are exploring strategies for positioning several polyyne rotaxane units around a central molecular hub, so that the polyynes can then be linked together to form a threaded cyclocarbon. Here, we present the first step in this endeavor: the synthesis of a [5]rotaxane in which four hexaynes are positioned around a porphyrin core. While the primary motivation for this work was to explore approaches to cyclocarbon catenanes, this study also provides insights into the interactions between the singlet excited states of polyyne and porphyrin chromophores. The initial target of this work was the porphyrin [5]rotaxane P5Ra shown in Figure . All attempts at the synthesis of this [5]rotaxane failed, presumably as a consequence of the steric bulk of the four [2]rotaxane substituents. However, we successfully synthesized the analogous porphyrin [5]rotaxane P5Rb with p-phenylene spacers at the meso-positions and the corresponding porphyrin [3]rotaxanes P3Ra and P3Rb (Scheme ). Here, we present the synthesis of these rotaxanes and an analysis of their fluorescence behavior, together with the crystal structure of a porphyrin [3]rotaxane P3Ra. This structure shows that the macrocycles adopt compact conformations due to the predominantly gauche geometries of the O–CH2CH2–O links, which increases the effective steric bulk of the rotaxane substituents and explains why the [5]rotaxane P5Ra could not be synthesized.
Figure 1

Structure of target [5]rotaxane P5Ra.

Scheme 1

Polyrotaxane and Porphyrin Synthesis

Porphyrins PM4a, PM2a, P3Ra, P5Ra, PM4b, PM2b, P3Rb, and P5Rb were isolated as zinc complexes after treatment with Zn(OAc)2·2H2O in methanol/chloroform.

Structure of target [5]rotaxane P5Ra.

Polyrotaxane and Porphyrin Synthesis

Porphyrins PM4a, PM2a, P3Ra, P5Ra, PM4b, PM2b, P3Rb, and P5Rb were isolated as zinc complexes after treatment with Zn(OAc)2·2H2O in methanol/chloroform. Our synthetic approach starts with the macrocyclic aldehyde Ma (Scheme ).[14,15] Active metal template Cadiot–Chodkiewicz coupling[7,11] of supertrityl triyne Tr*C6H and bromotriyne Tr*C6Br [where Tr* is tris(3,5-di-tert-butylphenyl)methyl[16]] in the presence of the copper(I) complex of Ma gave the [2]rotaxane aldehyde 2Ra in 58% yield. A wide variety of conditions were tested for the reaction of 2Ra with pyrrole in attempts to prepare P5Ra, but they all failed to give even a trace of this target [5]rotaxane, whereas control reactions of aldehyde Ma produced porphyrin PM4a in good yield. In contrast, reaction of the rotaxane aldehyde 2Ra with dipyrromethane gave the porphyrin [3]rotaxane P3Ra in 62% yield. These results imply that formation of P5Ra is blocked by the steric bulk of the rotaxane units, so we investigated the analogous compounds derived from macrocycle Mb, which has a p-phenylene spacer between the aldehyde functionality and the macrocycle. Increasing the distance between the bulky rotaxane unit and the porphyrin hub made it possible to synthesize [5]rotaxane P5Rb (10% yield isolated). The porphyrin [3]- and [5]rotaxanes, and reference porphyrins, were fully characterized as their zinc complexes Zn–P3Ra, Zn–P3Rb, Zn–P5Rb, Zn–PM2a, Zn–PM4a, Zn–PM2b, and Zn–PM4b (see the Supporting Information). Crystals of Zn–P3Ra were grown by diffusion of methanol vapor into a solution in chloroform and analyzed by single-crystal X-ray diffraction.[17] The crystal structure has two molecules of Zn–P3Ra in the asymmetric unit; both rotaxane molecules have similar conformations with methanol coordinated to the zinc centers. The phenanthroline units of each rotaxane form intermolecular π-stacked dimers with crystallographically equivalent rotaxanes, forming infinite strands of interactions, as illustrated in Figure . The oligoethylene glycol chains of the macrocycles adopt compact conformations and are mostly gauche (O–CH2CH2–O torsional angle 40–80°) with the polyyne chains held close to the porphyrin units. Thus, all four polyyne chains in the asymmetric unit make van der Waals contacts with the β-pyrrole protons of the porphyrins (sp-C···H distance: 2.9–3.1 Å). The hexayne chains have slightly curved geometries, similar to those reported in crystal structures of other polyynes.[9,11,16,18−20]
Figure 2

Projection of the structure of the [3]rotaxane Zn–P3Ra from X-ray crystallography. This figure only shows one of the two molecules in the asymmetric unit.

Projection of the structure of the [3]rotaxane Zn–P3Ra from X-ray crystallography. This figure only shows one of the two molecules in the asymmetric unit. The family of rotaxanes synthesized during this study provides a unique opportunity to investigate photophysical interactions between the excited states of polyyne and porphyrin chromophores. The photophysical behavior of polyynes is particularly interesting because their absorption spectra are dominated by strong transitions to higher excited states at 280–320 nm (S0–S, ε ≈ 3 × 105 M–1 cm–1); absorption into the first excited state is dipole-forbidden and can occasionally be observed as a very weak band at 350–450 nm (S0–S1, ε ≈ 500 M–1 cm–1).[16,18] Polyynes also exhibit remarkably fast intersystem crossing (S1–T1), which usually prevents observation of fluorescence. The absorption spectra of rotaxanes Zn–P3Ra, Zn–P3Rb, and Zn–P5Rb demonstrate that threading causes very little perturbation to the electronic structure of the component chromophores. Thus, the absorption bands of the polyyne (280–320 nm), the phenanthroline macrocycle (250–380 nm), and porphyrin (400–450 nm Soret band and 530–560 nm Q-band) are readily identified in the rotaxanes. Comparison with simple reference porphyrin derivatives (meso-tetraphenyl porphyrin for Zn–P5Rb and Zn–PM4a; 5,15-diaryl porphyrin for Zn–P3Ra, Zn–P3Rb, Zn–PM2a, and Zn–PM2b) shows that the polyyne and phenanthroline macrocycle units have no effect on the fluorescence quantum yield, measured on excitation of the porphyrin Soret band at around 415 nm. This demonstrates that there is no significant energy migration from the porphyrin to the polyyne or to the macrocycle. Fluorescence excitation spectra of the rotaxanes, measured by recording emission from the porphyrin Q-band at around 640 nm, show clear features from excitation into the polyyne and phenanthroline macrocycle components, as illustrated for Zn–P3Ra and Zn–PM2a in Figure , indicating that both of these chromophores transfer energy to the porphyrin. A detailed examination of the absorption spectra, fluorescence spectra, and excitation spectra of the whole family of compounds allowed us to determine the quantum yields of excited-state energy transfer (EET) from the polyyne to the porphyrin and from the phenanthroline macrocycle to the porphyrin as summarized in Table (see the SI for full details).
Figure 3

(a) Absorption spectra (continuous line) and excitation spectra (dashed line) of Zn–P3Ra (red) and Zn-PM2a (blue); the spectral intensities are normalized to 1.0 at the Q-band, and the excitation spectra are recorded for emission at 639 nm (porphyrin Q-band). Solvent: CH2Cl2. (b) Jablonski diagram showing the energy-transfer processes.

Table 1

Energy-Transfer Efficiencies ϕEET

compdϕEET(macrocycle → porphyrin)ϕEET(polyyne → porphyrin)
Zn–PM2a0.67 ± 0.08 
Zn–P3Ra0.32 ± 0.030.16 ± 0.02
Zn–PM2b0.88 ± 0.11 
Zn–P3Rb0.22 ± 0.030.10 ± 0.03
Zn–PM4b0.68 ± 0.06 
Zn–P5Rb0.25 ± 0.020.09 ± 0.02
(a) Absorption spectra (continuous line) and excitation spectra (dashed line) of Zn–P3Ra (red) and Zn-PM2a (blue); the spectral intensities are normalized to 1.0 at the Q-band, and the excitation spectra are recorded for emission at 639 nm (porphyrin Q-band). Solvent: CH2Cl2. (b) Jablonski diagram showing the energy-transfer processes. The comparison of macrocycle → porphyrin EET efficiencies in the presence and absence of polyyne show that the polyyne acts as a sink for singlet excited state energy from the phenanthroline macrocycle, even though it does not quench the porphyrin.[18] The excited-state energy of the macrocycle is split between the porphyrin and the polyyne. The higher efficiency of polyyneporphyrin EET in [3]rotaxane Zn–P3Ra, compared with Zn–P3Rb and Zn–P5Rb, reflects the shorter polyyneporphyrin distance. The polyyneporphyrin EET must be very rapid to compete with intersystem crossing (τ ≈ 0.5 ns).[18] Furthermore, the S1 of the polyyne is a dark state with negligible oscillator strength; therefore, Förster-type energy transfer is expected to be very inefficient, implying that the observed EET occurs via a Dexter mechanism. In conclusion, we have prepared a series of porphyrinpolyyne [3]- and [5]rotaxanes that comprise multiple chromophores in a unique interlocked architecture. An analysis of the absorption, fluorescence, and excitation spectra of the rotaxanes reveals three types of energy-transfer processes (a) from the phenanthroline macrocycle to the porphyrin, (b) from the phenanthroline macrocycle to the polyyne, and (c) from the polyyne to the porphyrin. This work paves the way for a template-directed synthesis of polycatenane cyclo[n]carbons.
  24 in total

1.  Carbon in one dimension: structural analysis of the higher conjugated polyynes.

Authors:  Slawomir Szafert; J A Gladysz
Journal:  Chem Rev       Date:  2003-11       Impact factor: 60.622

2.  Update 1 of: Carbon in one dimension: structural analysis of the higher conjugated polyynes.

Authors:  Slawomir Szafert; J A Gladysz
Journal:  Chem Rev       Date:  2006-11       Impact factor: 60.622

3.  Cadiot-Chodkiewicz active template synthesis of rotaxanes and switchable molecular shuttles with weak intercomponent interactions.

Authors:  José Berná; Stephen M Goldup; Ai-Lan Lee; David A Leigh; Mark D Symes; Gilberto Teobaldi; Francesco Zerbetto
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

4.  Synthesis of [2]rotaxanes by the catalytic reactions of a macrocyclic copper complex.

Authors:  Shinichi Saito; Eiko Takahashi; Kazuko Nakazono
Journal:  Org Lett       Date:  2006-10-26       Impact factor: 6.005

5.  Expanded radialenes with bicyclo[4.3.1]decatriene units: new precursors to cyclo[n]carbons.

Authors:  Yoshito Tobe; Rui Umeda; Naruhito Iwasa; Motohiro Sonoda
Journal:  Chemistry       Date:  2003-11-21       Impact factor: 5.236

6.  All-Carbon Molecules: Evidence for the Generation of Cyclo[18]carbon from a Stable Organic Precursor.

Authors:  F Diederich; Y Rubin; C B Knobler; R L Whetten; K E Schriver; K N Houk; Y Li
Journal:  Science       Date:  1989-09-08       Impact factor: 47.728

7.  Active metal template synthesis of rotaxanes, catenanes and molecular shuttles.

Authors:  James D Crowley; Stephen M Goldup; Ai-Lan Lee; David A Leigh; Roy T McBurney
Journal:  Chem Soc Rev       Date:  2009-04-16       Impact factor: 54.564

8.  Synthesis of [2]catenanes by oxidative intramolecular diyne coupling mediated by macrocyclic copper(I) complexes.

Authors:  Yuta Sato; Ryu Yamasaki; Shinichi Saito
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

9.  Cyclocarbon coalescence: mechanisms for tailor-made fullerene formation.

Authors:  S W McElvany; M M Ross; N S Goroff; F Diederich
Journal:  Science       Date:  1993-03-12       Impact factor: 47.728

10.  Evidence for solution-state nonlinearity of sp-carbon chains based on IR and Raman spectroscopy: violation of mutual exclusion.

Authors:  Andrea Lucotti; Matteo Tommasini; Daniele Fazzi; Mirella Del Zoppo; Wesley A Chalifoux; Michael J Ferguson; Giuseppe Zerbi; Rik R Tykwinski
Journal:  J Am Chem Soc       Date:  2009-04-01       Impact factor: 15.419

View more
  5 in total

1.  Conformational Control of [2]Rotaxane by Hydrogen Bond.

Authors:  Yusuke Kawasaki; Showkat Rashid; Katsuhiko Ikeyatsu; Yuichiro Mutoh; Yusuke Yoshigoe; Shoko Kikkawa; Isao Azumaya; Shoichi Hosoya; Shinichi Saito
Journal:  J Org Chem       Date:  2022-04-07       Impact factor: 4.198

2.  Porphyrinoid rotaxanes: building a mechanical picket fence.

Authors:  T H Ngo; J Labuta; G N Lim; W A Webre; F D'Souza; P A Karr; J E M Lewis; J P Hill; K Ariga; S M Goldup
Journal:  Chem Sci       Date:  2017-08-04       Impact factor: 9.825

Review 3.  Phenanthroline based rotaxanes: recent developments in syntheses and applications.

Authors:  Showkat Rashid; Yusuke Yoshigoe; Shinichi Saito
Journal:  RSC Adv       Date:  2022-04-12       Impact factor: 3.361

4.  Polyyne [3]Rotaxanes: Synthesis via Dicobalt Carbonyl Complexes and Enhanced Stability.

Authors:  Connor W Patrick; Joseph F Woods; Przemyslaw Gawel; Claire E Otteson; Amber L Thompson; Tim D W Claridge; Ramesh Jasti; Harry L Anderson
Journal:  Angew Chem Int Ed Engl       Date:  2022-01-20       Impact factor: 16.823

Review 5.  Heteroleptic copper phenanthroline complexes in motion: From stand-alone devices to multi-component machinery.

Authors:  Abir Goswami; Michael Schmittel
Journal:  Coord Chem Rev       Date:  2018-09-05       Impact factor: 22.315

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.