Yusuke Kawasaki1, Showkat Rashid1, Katsuhiko Ikeyatsu1, Yuichiro Mutoh1, Yusuke Yoshigoe1, Shoko Kikkawa2, Isao Azumaya2, Shoichi Hosoya3, Shinichi Saito1. 1. Department of Chemistry, Faculty of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku, Tokyo 162-8601, Japan. 2. Faculty of Pharmaceutical Sciences, Toho University, 2-2-1 Miyama, Funabashi, Chiba 274-8510, Japan. 3. Research Center for Medical and Dental Sciences, Tokyo Medical and Dental University, 1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan.
Abstract
A series of [2]rotaxanes with various functional groups in the axle component was synthesized by the oxidative dimerization of alkynes, which is mediated by a macrocyclic phenanthroline-Cu complex. The rotaxanes were fully characterized by spectroscopic methods, and the structure of a rotaxane was determined by X-ray crystallographic analysis. The interaction between the ring component and the axle component was studied in detail to understand the conformation of the rotaxanes. The presence of the hydrogen bond between the phenanthroline moiety in the macrocyclic component and the acidic proton in the axle component influenced the conformation of rotaxane.
A series of [2]rotaxanes with various functional groups in the axle component was synthesized by the oxidative dimerization of alkynes, which is mediated by a macrocyclic phenanthroline-Cu complex. The rotaxanes were fully characterized by spectroscopic methods, and the structure of a rotaxane was determined by X-ray crystallographic analysis. The interaction between the ring component and the axle component was studied in detail to understand the conformation of the rotaxanes. The presence of the hydrogen bond between the phenanthroline moiety in the macrocyclic component and the acidic proton in the axle component influenced the conformation of rotaxane.
[2]Rotaxane is an important
class of interlocked compounds, and
extensive studies related to the synthesis, structure, and dynamic
behavior have been reported.[1] Following
the seminal study of Dietrich–Buchecker and Sauvage, who reported
the synthesis of [2]catenates from macrocyclic phenanthrolines by
the metal-template method,[2] Gibson and
co-workers reported the synthesis of [2]rotaxane based on a similar
strategy.[3] These synthetic approaches were
extensively applied to the synthesis of various interlocked compounds.[4]Recent development of the synthetic methods
related to interlocked
compounds includes the use of a macrocyclic metal complex as a promotor
for the bond-forming reaction. The metal-mediated reaction proceeded
inside the macrocyclic metal complex so that the interlocked compounds
could be synthesized efficiently.[5] Leigh
and co-workers reported the first example of this approach, who employed
a macrocyclic pyridine–Cu complex.[6] Assuming that the Cu complex could mediate coupling reactions such
as the oxidative dimerization of alkynes (Glaser coupling), we reported
the synthesis of [2]rotaxanes from macrocyclic phenanthroline–Cu
complex and alkynes with bulky substituents (Scheme ).[7] Interlocked
compounds with polyyne structures have been synthesized by this method,
and the properties of these compounds have been studied by several
research groups.[8]
Scheme 1
Synthesis of [2]Rotaxane
by Glaser Coupling[7a]
We have been interested in the conformation of [2]rotaxane
with
a macrocyclic phenanthroline ring. The phenanthroline moiety of the
ring component would interact with the acidic hydrogen atom located
in the axle component and the conformation of the [2]rotaxane could
be affected, especially when the size of the ring component is small.[9] In this paper, we report the synthesis of small
[2]rotaxanes with functionalized axle components (Scheme ). The interaction between
the ring and axle components was studied to understand the conformation
of [2]rotaxanes.
Scheme 2
Synthesis of Small [2]Rotaxanes with a Functionalized
Axle Component
Results and Discussion
Synthesis
of the Precursors for [2]Rotaxane
A macrocyclic
phenanthroline–Cu complex (2) was synthesized
by the reaction of 1(8f) with
CuI (Scheme ). The
reaction proceeded smoothly, and 2 was isolated in 61%
yield.
Scheme 3
Synthesis of Macrocyclic Cu(I)–Phenanthroline Complex 2
As the precursor for the axle
component, we designed a series of
terminal alkynes with the tris(biphenyl)methyl group. The syntheses
of the alkynes 3a–i are summarized in Schemes and 5.
Scheme 4
Synthesis of Precursors 3a–d
Scheme 5
Synthesis of Precursors 3e–i
Tris([1,1′-biphenyl]-4-yl)methanol reacted
with aniline
hydrochloride under acidic conditions, and the substituted aniline 5(10) was isolated in 64% yield (Scheme ). Aniline 5 was converted to aryl iodide 6 by the Sandmeyer
reaction.[11] Compound 6 was
further converted to alkynes with various functional groups. For example,
the Sonogashira reaction of 6 with (trimethylsilyl)acetylene
and the removal of the trimethylsilyl (TMS) group gave 3a in 83% yield. Similarly, the reaction of 6 with 7(12) gave alkyne 3b in comparable yield. Iodide 6 was converted to boronic
acid 8 in 66% yield. The introduction of the benzyl group
was achieved by the Suzuki–Miyaura reaction of 8 with 4-(trimethylsilylethynyl)benzyl bromide 9.[13] The deprotection of 10 under basic
conditions gave 3c in 85% yield. An N-methylaniline derivative 11 was synthesized by the
reaction of tris([1,1′-biphenyl]-4-yl)methanol and N-methylaniline hydrochloride in 21% yield. Compound 11 reacted with iodide 12(14) to give 13 in 76% yield,[15] and further removal of the TMS group gave 3d in 63% yield.Secondary amine 3f was prepared
by the Pd-catalyzed
arylation of 5 and the removal of the TMS group (Scheme ). Amide 3h was synthesized by the condensation of 5 with acid 15.[16] The reduction of 3h gave amine 3g in a high yield. Fluorenylmethoxycarbonyl
(Fmoc)-protected compound 3e was synthesized by treating 3g with FmocCl. Triazole derivative 3i was prepared
from 6 in three steps.[6]
Synthesis of [2]Rotaxanes
With the axle precursors
in hand, we studied the synthesis of rotaxanes by the reaction of 2 with 3a–i. The results are summarized
in Table .
Table 1
Synthesis of a [2]Rotaxane 4 by Cu-Mediated
Oxidative Coupling
Procedure A: K2CO3 (10 + 10 equiv), I2 (1.0 + 1.0 equiv),
time (24
+ 24 h); procedure B: K2CO3 (3.75 equiv), I2 (1.25 equiv), time (48 h).KCN was employed for the removal
of the Cu ion.A mixture
of phenanthroline–Cu complex 2 (1
equiv), alkyne 3a (2.5 equiv), I2 (1.0 equiv),
and K2CO3 (10 equiv) in tetrahydrofuran (THF)
was heated at 60 °C for 24 h. To the mixture was added I2 (1.0 equiv) and K2CO3 (10 equiv), and
the resulting mixture was heated again for 24 h. After the removal
of the Cu ion by ammonia, product 4a was isolated in
86% yield (entry 1, procedure A). Alkynes 3b and 3c were reacted with 2 under the same conditions,
and [2]rotaxanes were isolated in 49% (4b) and 39% (4c) yields, respectively (entries 2 and 3). The yield of rotaxane
decreased when 3d was employed as the starting material
(28%, entry 4). Rotaxane 4e was isolated in 47% yield
under modified conditions using smaller amounts of K2CO3 (3.75 equiv) and I2 (1.25 equiv, entry 5, procedure
B): to prevent the cleavage of the Fmoc group, KCN was used to remove
the Cu ion. The synthesis of 4f was examined under two
reaction conditions, and the yield was better (60%) when procedure
B was employed (entries 6 and 7). The reaction of benzylamine derivative 3g gave the corresponding rotaxane 4g in very
low yield regardless of the procedures (entries 8 and 9). We assumed
that the diarylamino group induced the removal of the copper ion from
the phenanthroline moiety and suppressed the formation of rotaxane.
Compound 4g was synthesized in a better yield by the
removal of the Fmoc group from 4e (Scheme ). Rotaxanes 4h and 4i were synthesized in 46% and 48% yields, respectively, by procedure
A (entries 10 and 11).
Scheme 6
Synthesis of [2]Rotaxane 4g by Deprotection of 4e
The structure of 4a was elucidated by X-ray crystallographic
analysis, and the results are summarized in Figure . The molecular structure of 4a provided insights into the conformation of the rotaxanes. In the
molecular structure obtained by the recrystallization of 4a from hexane–toluene, short contacts between the Csp carbon atoms and the hydrogen atoms bound to the aromatic ring were
observed (Figure a).[8f] We also succeeded in determining the molecular
structure of 4a from another sample, which was obtained
by the recrystallization of 4a from methyl tert-butyl ether (MTBE)–chloroform (Figure b). In the structure, the C–H···N
interaction between chloroform and the phenanthroline moiety, in addition
to the short contact between the Csp carbon atom and the
hydrogen atom, was detected (Figure b). A similar interaction has been reported in the
literature.[17]
Figure 1
Molecular structure of
[2]rotaxane 4a with thermal
ellipsoids at 50% probability. Most hydrogen atoms are omitted for
clarity, and noncovalent interactions are shown by red dotted lines.
(a) Sample obtained by recrystallization from hexane–toluene.
Co-crystallized solvent molecules (toluene and hexane) are omitted
for clarity. Only the position with higher occupancy of the disordered
methylene groups is shown. d(CH/Csp):
(a) 2.80; (b) 2.79; (c) 2.79 Å. (b) Sample obtained by recrystallization
from MTBE–chloroform. Only the position with higher occupancy
of the disordered methylene and phenyl groups are shown. d(CH/N and CH/Csp): (d) 2.32; (e) 2.50; (f) 2.70 Å.
Molecular structure of
[2]rotaxane 4a with thermal
ellipsoids at 50% probability. Most hydrogen atoms are omitted for
clarity, and noncovalent interactions are shown by red dotted lines.
(a) Sample obtained by recrystallization from hexane–toluene.
Co-crystallized solvent molecules (toluene and hexane) are omitted
for clarity. Only the position with higher occupancy of the disordered
methylene groups is shown. d(CH/Csp):
(a) 2.80; (b) 2.79; (c) 2.79 Å. (b) Sample obtained by recrystallization
from MTBE–chloroform. Only the position with higher occupancy
of the disordered methylene and phenyl groups are shown. d(CH/N and CH/Csp): (d) 2.32; (e) 2.50; (f) 2.70 Å.
Comparison of the 1H NMR Spectra
of [2]Rotaxanes
Further analysis of the structure and conformation
of [2]rotaxanes
was done by 1H NMR spectroscopy. In the spectra of [2]rotaxanes
we studied, sharp signals were detected in most compounds and the
localization of the ring component to a specific position was not
observed at rt.[18,19] Based on these results, we assume
that the movement of the ring component along the axle component is
fast, and the observed chemical shifts are the average of the conformers.
Partial 1H NMR spectra of ring component 1 and [2]rotaxanes (4a–i) are shown in Figure . We assigned the
signals[20] that correspond to Hd, He, and Hf of the macrocyclic components,
and the chemical shifts were compared (Table ). Based on the observed chemical shifts,
rotaxanes were classified into two groups. In the compounds classified
into group A (4a–e), the chemical shifts of Hd, He, and Hf appeared at 8.3–8.5,
7.1–7.2, and 7.0–7.1 ppm, respectively. It is noteworthy
that the difference in the chemical shifts is small, regardless of
the structure of the axle moiety. The chemical shifts of Hd and He in the phenanthroline moiety are similar to those
of macrocyclic phenanthroline 1, while the chemical shift
of Hf, which is bound to the resorcinol framework, shifted
downfield (0.4–0.5 ppm) compared to the corresponding signal
of 1. Because a larger difference of the chemical shift
in the resorcinol moiety was induced by the formation of the [2]rotaxane,
we assume that the “distance”[21] between the resorcinol moiety and the axle component is short: the
axle component is not located in the proximity of the phenanthroline
moiety.
Comparison of the Chemical Shifts
(ppm) of [2]Rotaxanes 4a–i and the Ring Component 1a
ΔHd–f = Hd–f(4) – Hd–f(1).
1H NMR spectra of [2]rotaxanes 4a–i (500 MHz, CDCl3, 295 K).ΔHd–f = Hd–f(4) – Hd–f(1).In contrast, the chemical shifts
(Hd, He,
and Hf) of the compounds classified into group B (4f–i) were significantly different from those of 4a. The chemical shifts of Hd and He in compounds that belong to group B shifted upfield compared to
the corresponding chemical shifts of the compounds that belong to
group A. For example, the chemical shift of Hd in 4a appeared at 8.38 ppm, while the corresponding signal in 4f appeared at 7.61 ppm.Furthermore, the difference
in the chemical shifts strongly depends
on the structure of the axle moiety, implying that the axle moiety
is located in the proximity of the phenanthroline moiety. Next, we
compared the chemical shifts of rotaxanes (4) with those
of the corresponding axle components (17, Table ). The difference between the
chemical shifts of the methylene group (Hy) of 4c and 17c was small (ΔHy = −0.19
ppm): in rotaxane 4c, the signal appeared at 3.77 ppm,
while the corresponding signal appeared at 3.96 ppm in 17c. A similar trend was observed when we compared the chemical shift
of the methyl group of 4d with that of 17d. The difference between the chemical shifts of the methyl group
was small (ΔHy = −0.16 ppm). Rotaxanes 4c and 4d belong to group A. When similar analyses
were conducted with rotaxanes that belongs to group B, the difference
in the chemical shifts was significantly large. The chemical shift
(7.68 ppm) of the proton bound to the nitrogen atom in rotaxane (4f), for example, shifted upfield (5.87 ppm) in the axle component
(17f): the difference in the chemical shifts was large
(ΔHy = 1.81 ppm). Similar results were obtained when
we compared the chemical shifts of rotaxanes 4g–i with diynes 17g–i. The signal assigned to Hy in 4g–i shifted upfield (1.03–1.67
ppm) in 17g–i.
Table 3
Comparison of the
Chemical Shifts
(ppm) of [2]Rotaxanes 4c,d,f–i with the Axle Components 17c,d,f–ia
ΔHy = Hy(4)
– Hy(17).
ΔHy = Hy(4)
– Hy(17).The results summarized in Tables and 3 could be explained
by
assuming the presence (or absence) of the hydrogen bond between the
axle component and the ring component of rotaxane. In 4c, which belong to group A, no strong interaction between the axle
component and the ring component would be present, and the axle component
would be located in the proximity of the resorcinol moiety to minimize
the steric interaction between the bulky phenanthroline moiety and
the axle component (Figure ). Consequently, the chemical shifts of Hd, He, and Hy are less affected by the presence of the
axle component, while the signal of Hf shift downfield.
The situation would change significantly in the rotaxanes that belong
to group B.
Figure 3
Supposed major conformation of 4c and 4f in CDCl3.
Supposed major conformation of 4c and 4f in CDCl3.In 4f, for
example, the presence of the hydrogen bond
between the axle component and the ring component would affect the
conformation of rotaxane (Figure ). The axle component would be located in the proximity
of the phenanthroline moiety. Consequently, the chemical shifts of
Hd and He would be significantly affected by
the presence of the axle component. The chemical shift of Hy would also be strongly affected by the presence of the macrocycle
because Hy would form a hydrogen bond with the phenanthroline
moiety. The formation of the hydrogen bond between the acidic triazole
proton and the amine moiety in [2]rotaxane has been postulated by
several research groups.[22,23]If the conformation
of rotaxane was influenced by the presence
of the hydrogen bond, a notable solvent effect on the chemical shifts
of rotaxanes would be observed. In a highly polar solvent, the hydrogen
bond between the axle component and the ring component would be cleaved,
and this would affect the conformation as well as the chemical shifts
of rotaxanes. To confirm the presence of the intramolecular hydrogen
bond, we selected 4c, in which the intramolecular hydrogen
bond would not be present, and 4f, in which the hydrogen
bond between the phenanthroline moiety and the amino group would be
present. We observed the 1H NMR spectra of 4c and 4f in two solvents (DMSO-d6 and CDCl3), and the results are shown in Figure . The chemical shifts
of rotaxanes 4c and 4f and ring component 1 are summarized in Table . When we observed the 1H NMR spectra of 4c and 4f in DMSO-d6, the difference in the chemical shifts of Hd, He, and Hf was small (less than 0.2 ppm), implying that 4c and 4f would adopt a similar conformation
in DMSO-d6 (Table ). Meanwhile, the 1H NMR spectra
of 4c and 4f were different in CDCl3. In the NMR spectrum of 4c, the signal of Hf shifted downfield (0.44 ppm) compared to the corresponding
signal of macrocyclic phenanthroline 1, and the difference
in other signals (Hd and He) was negligible.[24]
Figure 4
Partial 1H NMR spectra of [2]rotaxanes 4c and 4f (500 MHz, 295 K); (a) in DMSO-d6, (b) in CDCl3.
Table 4
Comparison of Chemical Shifts (ppm)
of [2]Rotaxanes 4c,f and Ring Component 1a
ΔHd–f = Hd–f(4) – Hd–f(1).
Partial 1H NMR spectra of [2]rotaxanes 4c and 4f (500 MHz, 295 K); (a) in DMSO-d6, (b) in CDCl3.ΔHd–f = Hd–f(4) – Hd–f(1).The result implies that the axle
component of 4c is
located in the proximity of the resorcinol moiety (Figure ). In contrast, the chemical
shifts of Hd and He shifted upfield (0.76 and
0.50 ppm, respectively) in 4f compared to the corresponding
signals of 1, while the difference in the chemical shifts
of Hf was small (0.04 ppm). The result could be explained
by postulating the presence of the intramolecular hydrogen bond between
the axle component and the ring component of 4f (Figure ). The axle component
of 4f would be located in the proximity of the phenanthroline
moiety, and the chemical shifts of Hd and He would be strongly affected.The presence of the intramolecular
hydrogen bond was also supported
by comparing the 1H NMR chemical shifts of the axle moiety
of rotaxanes and related compounds in different solvents (Table ). The difference
in the chemical shifts of the methylene group of 4c and
that of 17c in DMSO-d6 was
small (−0.20 ppm). Similar results were observed when the chemical
shifts of the NH group of 4f and that of 17f in DMSO-d6 were compared or the chemical
shifts of the methylene group of 4c and that of 17c in CDCl3 were compared. In contrast, a large
difference (1.81 ppm) was observed when the chemical shifts of the
NH group of 4f and that of 17f in CDCl3 were compared. The results could be reasonably interpreted
by postulating that the intramolecular hydrogen bond is present in
a solution of 4f in CDCl3.[25]
Table 5
Comparison of the Chemical Shifts
(ppm) of [2]Rotaxanes 4c,f and the Axle
Components 17c,fa
ΔHy = Hy(4)
– Hy(17).
ΔHy = Hy(4)
– Hy(17).
Variable-Temperature 1H NMR Experiments
We assumed that the conformation of [2]rotaxanes of group B adopted
a structure with a low symmetry (Figure b). The observed NMR spectra at 295 K, however,
do not directly correspond to the assumed conformation; the signals
of the two dumbbell moieties, for example, were equivalent. The observed
NMR spectra of [2]rotaxanes of group B could be explained in terms
of the fast shuttling of the ring component at 295 K (Figure ).[22,26]
Figure 5
Expected
shuttling behavior of group B rotaxanes.
Expected
shuttling behavior of group B rotaxanes.Expecting that the rate of the shuttling would decrease at low
temperatures and that the signals that reflect the less symmetric
structure of [2]rotaxane would appear, we conducted the variable-temperature 1H NMR experiments of 4c, 4f, and 4h in CD2Cl2. When the 1H
NMR spectrum of 4c, a negative control, was observed
at low temperatures, only the broadening of the signals was observed,
and the difference in the chemical shifts was small (Figure S1). Similar results were obtained when the 1H NMR spectrum of 4f, a rotaxane that would form a hydrogen
bond, was recorded (Figure S2). In 4h, on the other hand, the chemical shift of the amide group
(Hy, 11.59 ppm) at 188 K was downfield (1.6 ppm) compared
to the corresponding signal at 203 K (9.95 ppm, Figure ). We assume that the signal observed at
203 K (9.95 ppm) split into two signals at a low temperature (188
K). One signal that appeared at 11.59 ppm would correspond to the
amide proton that interacted with the phenanthroline moiety by the
hydrogen bond, and the other signal was not detected because the signal
overlapped with other signals.[27] Based
on the observed data, the activation energy for the shuttling process
of 4h was assumed to be 8 kcal/mol.[28,29]
Figure 6
Partial
VT 1H NMR spectra of 4h (500 MHz,
CD2Cl2).
Partial
VT 1H NMR spectra of 4h (500 MHz,
CD2Cl2).We anticipated that the N–H···N interaction
would be stronger in a less polar solvent and observed the 1H NMR spectra of 4f in toluene-d8 (Figure c,
bottom). Notably, two NH signals were observed at 4.86 and 10.70 ppm
at 193 K. We confirmed that these signals correspond to the amino
group by observing the 1H NMR spectra of the deuterated
compound 4f- (78 atom % D of the N–D bond, Figure b, middle). Because the signal of the amino
group of 17f (the axle component of 4f)
was observed at 4.83 ppm in toluene-d8 at 193 K (Figure a, top), the signal of 4f, which appeared at 4.86 ppm,
could be assigned to the free amino group, while the signal observed
at 10.70 ppm would correspond to the amino group that interacted with
the phenanthroline moiety. The amino groups in 4f appeared
as two non-equivalent signals at 193 K due to the decrease in the
rate of the shuttling.[8h,30]
Figure 7
Partial 1H NMR spectra of 4f (bottom, c), 4f- (middle, b), and 17f (top, a) at 193 K (400 MHz, toluene-d8).
Partial 1H NMR spectra of 4f (bottom, c), 4f- (middle, b), and 17f (top, a) at 193 K (400 MHz, toluene-d8).
Conclusions
In summary, we synthesized [2]rotaxanes with
various functional
groups and studied the conformation of the compounds. The comparison
of 1H NMR spectra of [2]rotaxanes and related components
in CDCl3 showed that the spectra of rotaxanes were significantly
affected by the structure of the axle component. The result could
be explained by postulating the presence of the intramolecular hydrogen
bond between the phenanthroline moiety and the acidic hydrogen atom
in the axle component. The observation of some non-equivalent 1H NMR signals at low temperatures supports the idea that the
shuttling of the ring component occurs in some rotaxanes that form
hydrogen bonds. The study would contribute to the understanding of
the conformation of the interlocked compounds.
Experimental
Section
General Methods
Reagents were commercially available
and were used without further purification. An oil bath or a bead
bath was used as the heat source, and the external temperature was
reported. NMR spectra were recorded on a JEOL 400 or 500 MHz spectrometer
or a Bruker 400 MHz NMR spectrometer. Chemical shifts were reported
in delta units (δ) relative to chloroform (7.24 ppm for 1H NMR and 77.0 ppm for 13C NMR) or dimethyl sulfoxide
(DMSO) (2.50 ppm for 1H NMR and 39.5 ppm for 13C NMR). Multiplicity is indicated by s (singlet), d (doublet), t
(triplet), q (quartet), quint (quintet), m (multiplet), or br (broad).
Coupling constants, J, are reported in Hertz. IR
spectra were recorded on a Fourier transform infrared spectrometer
using a diamond ATR module. A YMC-GPC T30000 (21.2 mm ID ×
600 mm L) column was used for GPC separation using CHCl3 as the eluent. Thin layer chromatography was performed on
Merck silica gel 60F-254 plates. Column chromatography was performed
using Kanto Chemical silica gel 60N (spherical, neutral 40–50
μm). High-resolution mass spectra (HRMS) were obtained by using
a time-of-flight (TOF) mass analyzer.
Macrocyclic Cu(I)–Phenanthroline
Complex (2)
To a solution of 1(8f) (408 mg, 0.70 mmol) in CH2Cl2 (35 mL) was
added a solution of CuI (133 mg, 0.70 mmol, 1 equiv) in CH3CN (14 mL), and the mixture was stirred at rt for 2 h. The solvent
was removed in vacuo, and the residue was recrystallized from hexane–CH2Cl2 to yield 2 (328 mg, 0.42 mmol,
61%) as an orange powder: mp 171.1–172.2 °C; 1H NMR (400 MHz, CDCl3): δ 8.44 (d, J = 7.6 Hz, 2H), 8.02 (br, 8H), 7.13 (m, 5H), 7.10 (t, J = 8.6 Hz, 1H), 6.59 (s, 2H), 6.47 (d, J = 8.4 Hz,
2H), 4,29 (t, J = 6.2 Hz, 4H), 4.03 (s, 4H), 2.06
(br, 4H), 1.93 (br, 4H); 13C{1H} NMR (100 MHz,
DMSO-d6, 423 K): δ 161.0, 160.9,
160.7, 144.6, 138.1, 130.6, 130.5, 130.3, 126.9, 126.7, 116.3, 108.1,
103.2, 79.6, 68.8, 26.3, 26.1 (one signal is missing); IR (ATR): 1603,
1582, 1487 cm–1; Anal. Calcd for C38H34CuIN2O4·1.6 (CH2Cl2): C, 52.32; H, 4.12; N, 3.08. Found: C, 52.38; H, 3.73; N,
3.01.
A mixture of 6 (421 mg, 0.62
mmol),
Pd[(PPh3)2]Cl2 (13.1 mg, 0.019 mmol,
3.0 mol %), and CuI (7.1 mg, 0.037 mmol, 6.0 mol %) in dry THF (10
mL) and dry triethylamine (10 mL) was stirred at rt for 5 min under
Ar. (Trimethylsilyl)acetylene (0.10 mL, 0.72 mmol, 1.2 equiv) was
added in one portion, and the mixture was stirred at rt for 30 min.
Saturated NH4Cl aq (10 mL) was poured into the solution,
and the mixture was extracted with MTBE (3 × 30 mL). The combined
organic layer was washed with brine, dried over Na2SO4, and concentrated in vacuo. To the residue were added K2CO3 (172 mg, 1.3 mmol, 2.0 equiv), CH2Cl2 (20 mL), and MeOH (10 mL), and the mixture was stirred
at rt for 1 h. After the addition of water, the mixture was extracted
with CH2Cl2 (3 × 25 mL). The combined organic
layer was washed with water, dried over MgSO4, and concentrated
in vacuo. The residue was purified by silica gel column chromatography
(hexane/CH2Cl2 = 5/1) to yield 3a (298 mg, 0.52 mmol, 83%) as a white solid; mp 232.8–234.6
°C; 1H NMR (500 MHz, CDCl3): δ 7.59
(d, J = 7.5 Hz, 6H), 7.52 (d, J =
8.6 Hz, 6H), 7.40–7.45 (m, 8H), 7.30–7.34 (m, 11H),
3.05 (s, 1H); 13C{1H} NMR (126 MHz, CDCl3): δ 147.6, 145.3, 140.4, 138.8, 131.44, 131.39, 131.0,
128.8, 127.3, 127.0, 126.3, 119.7, 83.5, 77.1, 64.3; IR (ATR): 1486
cm–1; HRMS (ESI): calcd for C45H32 ([M]+), 572.2499; found, 572.2496.
A mixture of 6 (337 mg, 0.5
mmol), Pd[(PPh3)2]Cl2 (10.5 mg, 0.015
mmol, 3.0 mol %), and CuI (5.71 mg, 0.030 mmol, 6.0 mol %) in dry
THF (10 mL) and dry triethylamine (10 mL) was stirred at rt for 5
min. To the mixture was added ([4-ethynylphenyl]ethynyl)trimethylsilane 7 (99.2 mg, 0.5 mmol, 1.0 equiv), and the resulting mixture
was stirred for 30 min. The mixture was added to a saturated aqueous
solution of NH4Cl (10 mL) and extracted with MTBE (3 ×
30 mL). The combined organic layer was washed with brine, dried over
Na2SO4, and concentrated in vacuo; To the residue
was added K2CO3 (138 mg, 1.0 mmol, 2.0 equiv),
CH2Cl2 (20 mL), and MeOH (10 mL), and the mixture
was stirred at rt for 1 h. After the addition of water, the mixture
was extracted with CH2Cl2 (3 × 25 mL).
The combined organic layer was washed with water, dried over MgSO4, and concentrated in vacuo. The residue was purified by silica
gel column chromatography (hexane/CH2Cl2 = 5/1)
to yield 3b (273 mg, 0.41 mmol, 81%) as a white solid;
mp 238.8–240.4 °C; 1H NMR (500 MHz, CDCl3): δ 7.61 (d, J = 7.5 Hz, 6H), 7.53
(d, J = 8.6 Hz, 6H), 7.41–7.47 (m, 12H), 7.31–7.37
(m, 11H), 3.15 (s, 1H); 13C{1H} NMR (126 MHz,
CDCl3): δ 147.4, 145.4, 140.4, 138.8, 132.0, 131.5,
131.4, 131.1, 130.9, 128.8, 127.3, 127.0, 126.3, 123.8, 121.8, 120.5,
91.2, 89.0, 83.3, 78.9, 64.3; IR (ATR): 1512, 1486 cm–1; HRMS (ESI): calcd for C53H36 ([M]+), 672.2812; found, 672.2803.
A mixture of 6 (880 mg, 1.3
mmol) in dry THF (8 mL) was cooled to −78 °C under Ar.
Then, n-BuLi in hexane (1.00 mL, 1.57 M, 1.56 mmol,
1.2 equiv) and B(OMe)3 (0.35 mL, 0.33 mmol, 2.4 equiv)
were added, and the mixture was stirred for 2 h. The mixture was allowed
to warm to rt and stirred again for 2 h. Saturated NH4Cl
aq (10 mL) was poured into the reaction mixture, and the resulting
mixture was stirred for 5 min and extracted with MTBE (3 × 20
mL). The combined organic layer was washed with water, dried over
MgSO4, and concentrated in vacuo. The residue was purified
by silica gel column chromatography (hexane/CH2Cl2 = 1/2) to yield 8 (510 mg, 0.86 mmol, 66%) as a colorless
amorphous solid; mp 231.1–232.7 °C; 1H NMR
(500 MHz, DMSO-d6): δ 8.03 (s, 2H),
7.75 (d, J = 8.6 Hz, 2H), 7.66–7.69 (m, 12H),
7.45 (t, J = 8.0 Hz, 6H), 7.34–7.37 (m, 9H),
7.26 (d, J = 8.6 Hz, 2H); 13C{1H} NMR (100 MHz, DMSO-d6): δ 149.7,
147.1, 141.0, 139.2, 135.3, 133.5, 132.6, 131.1, 130.5, 129.0, 128.1,
127.6, 65.6; IR (ATR): 1485 cm–1; Anal. Calcd for
C43H33BO2 (−1/6 H2O): C, 87.61; H, 5.59. Found: C, 87.68; H, 5.59.
A mixture of
tris([1,1′-biphenyl]-4-yl)methanol
(2.44 g, 5.0 mmol) and N-methylaniline hydrochloride
(1.44 g, 10 mmol, 2 equiv) in dry toluene (10 mL) and acetic acid
(10 mL) was refluxed under Ar for 3 h. The mixture was cooled to rt
and extracted with CHCl3 (3 × 100 mL). Saturated NaHCO3 aq (100 mL) was added to the combined organic layer, and
the mixture was stirred for 1 h. The organic layer was separated,
and the water layer was extracted with CHCl3 (3 ×
50 mL). The combined organic layer was dried over Na2SO4 and concentrated in vacuo. The residue was purified by silica
gel column chromatography (hexane/CHCl3 = 1/2) to yield 11 (608 mg, 1.1 mmol, 21%) as a white solid; mp 230.5–233.1
°C; 1H NMR (500 MHz, CDCl3): δ 7.59
(d, J = 8.0 Hz, 6H), 7.50 (d, J =
8.6 Hz, 6H), 7.40 (t, J = 8.0 Hz, 6H), 7.35 (d, J = 8.0 Hz, 6H), 7.30 (t, J = 7.5 Hz, 3H),
7.11 (d, J = 8.6 Hz, 2H), 6.58 (d, J = 8.0 Hz, 2H), 4.07 (br, 1H), 2.83 (s, 3H); 13C{1H} NMR (100 MHz, CDCl3): δ 147.1, 146.4,
140.7, 138.3, 135.4, 132.0, 131.5, 128.7, 127.1, 126.9, 126.0, 111.5,
63.6, 30.7; IR (ATR): 1613, 1520, 1485, cm–1; HRMS
(ESI): calcd for C44H36N ([M + H]+), 578.2842; found, 578.2845.
General Procedure for Amination
A mixture of arylamine
(1.0 equiv), ([4-iodophenyl]ethynyl)trimethylsilane 12 (1.1 equiv), NaOt-Bu in THF (1.0 M, 1.3 equiv),
tri-tert-butylphosphonium tetrafluoroborate (10 mol
%), Pd2(dba)3 (5 mol %), and toluene (4.0 mL/1.0
mmol of arylamine) was refluxed under Ar for 17 h. To the solution
was added water, and the mixture was extracted with CH2Cl2. The combined organic layer was washed with water,
dried over MgSO4, and concentrated in vacuo. The residue
was purified by column chromatography.
To
a solution
of 3h (257 mg, 0.37 mmol) in anhydrous THF (5 mL) was
added a suspension of LiAlH4 (42.3 mg, 1.1 mmol, 3.0 equiv)
in THF (1.1 mL) at 0 °C under Ar with stirring. The mixture was
stirred at 70 °C for 2 h. To the mixture was added aqueous NaOH
(7.5%, 0.2 mL), and the mixture was stirred for 5 min at rt. The mixture
was filtered over Celite, and the filter cake was rinsed with EtOAc.
The combined organic layer was dried over MgSO4 and concentrated
in vacuo. The residue was purified by silica gel column chromatography
(hexane/CH2Cl2 = 1/1) to yield 3g (227 mg, 0.335 mmol, 90%) as a white solid; mp 118.9–120.0
°C; 1H NMR (500 MHz, CDCl3): δ 7.59
(d, J = 8.0 Hz, 6H), 7.49 (d, J =
8.0 Hz, 6H), 7.45 (d, J = 8.0 Hz, 2H), 7.41 (t, J = 7.5 Hz, 6H), 7.29–7.34 (m, 11H), 7.09 (d, J = 8.6 Hz, 2H), 6.56 (d, J = 7.5 Hz, 2H),
4.31, (s, 2H), 4.08 (br, 1H) 3.04 (s, 1H); 13C{1H} NMR (100 MHz, CDCl3): δ 146.3, 145.8, 140.6,
140.4, 138.4, 135.9, 132.4, 132.0, 131.5, 128.7, 127.4, 127.1, 126.9,
126.0, 120.9, 111.9, 83.5, 77.1, 63.6, 48.2; IR (ATR): 3425, 3286,
1611, 1514, 1485 cm–1; HRMS (ESI): calcd for C52H40N ([M + H]+), 678.3155; found, 678.3152.
A mixture of 6 (1.08 g 1.6
mmol),
NaN3 (125 mg, 1.9 mmol, 1.2 equiv), l-proline
(36.8 mg, 0.32 mmol, 0.2 equiv), NaOH (12.8 mg, 0.32 mmol, 0.2 equiv),
and CuI (30.5 mg, 0.160 mmol, 0.1 equiv) in dry DMSO (6 mL) was stirred
at 90 °C under Ar for 6 h. To the mixture was added water at
rt, and the mixture was extracted with EtOAc (3 × 20 mL). The
combined organic layer was washed with brine, dried over Na2SO4, and concentrated in vacuo. The residue was purified
by silica gel column chromatography (hexane/CH2Cl2 = 1/1) to yield 16 (430 mg, 0.73 mmol, 46%) as a white
solid; mp 174.9–177.0 °C; 1H NMR (500 MHz,
CDCl3): δ 7.59 (d, J = 7.5 Hz, 6H),
7.52 (d, J = 8.6 Hz, 6H), 7.41 (t, J = 8.0 Hz, 2H), 7.30–7.34 (m, 11H), 7.08 (d, J = 8.6 Hz, 2H); 13C{1H} NMR (75 MHz, CDCl3): δ 145.5, 143.6, 140.4, 138.8, 137.8, 132.5, 131.4,
128.8, 127.3, 126.9, 126.3, 118.2, 63.9; IR (ATR): 2118, 2082, 1600,
1504, 1487 cm–1; HRMS (FAB): calcd for C43H31N3 ([M]+), 589.2518; found, 589.2508.
A mixture of 16 (177 mg, 0.30
mmol), ([4-ethynylphenyl]ethynyl)trimethylsilane (71.4 mg, 0.36 mmol,
1.15 equiv), l-sodium ascorbate (11.9 mg, 0.060 mmol, 0.2
equiv), and CuSO4·5H2O (15.0 mg, 0.060
mmol, 0.2 equiv) in dry DMF (5 mL) was stirred at rt for 2 days. Saturated
NH4Cl aq (10 mL) was poured into the solution, and the
mixture was extracted with EtOAc (3 × 15 mL). The combined organic
layer was washed with brine, dried over Na2SO4, and concentrated in vacuo. The residue was treated with a solution
of KOH (252 mg, 0.45 mmol, 1.5 equiv) in a mixture of THF (16 mL)
and MeOH (4 mL), and the mixture was stirred at rt for 1 h. Water
was added to the solution, and the mixture was extracted with CH2Cl2 (3 × 15 mL). The combined organic layer
was washed with brine, dried over Na2SO4, and
concentrated in vacuo. The residue was purified by silica gel column
chromatography (hexane/CH2Cl2 = 1/1) to yield 3i (184 mg, 0.26 mmol, 86%) as a white solid; mp 226.0–227.2
°C; 1H NMR (500 MHz, CDCl3): δ 8.18
(s, 1H), 7.86 (d, J = 8.6 Hz, 2H), 7.71 (d, J = 9.2 Hz, 2H), 7.60 (d, J = 8.6 Hz, 6H),
7.53–7.58 (m, 10H), 7.42 (t, J = 7.5 Hz, 6H),
7.38 (d, J = 8.6 Hz, 6H), 7.33 (t, J = 7.5 Hz, 3H), 3.13 (s, 1H); 13C{1H} NMR (126
MHz, CDCl3): δ 147.9, 147.6, 145.2, 140.3, 139.0,
134.8, 132.7, 132.4, 131.3, 130.5, 128.8, 127.4, 127.0, 126.4, 125.6,
122.0, 119.8, 117.9, 83.4, 78.1, 64.2; IR (ATR): 3285, 1516, 1486
cm–1; HRMS (FAB): calcd for C53H38N3 ([M]+), 716.3066; found, 716.3066.
General Procedure A for the Synthesis of [2]Rotaxanes
A
mixture of macrocyclic phenanthroline–CuI complex 2 (1.0 equiv), alkyne (2.5 equiv), K2CO3 (10
equiv), and I2 (1.0 equiv) in dry THF (6.25 mL/0.1
mmol of 2) was stirred at 60 °C under Ar for 24
h. Then, K2CO3 (10 equiv) and I2 (1.0
equiv) were added, and the mixture was stirred again at 60 °C
for 24 h. The mixture was cooled to rt, and CH2Cl2 (7.5 mL/0.1 mmol of 2), CH3CN (17.5 mL/0.1
mmol of 2), and NH3 aq (30%, 8.5 mL/0.1 mmol
of 2) were added. After stirring at rt overnight, the
solution was extracted with CH2Cl2, dried over
Na2SO4, and concentrated in vacuo. The residue
was purified by column chromatography and GPC.
General Procedure B for
the Synthesis of [2]Rotaxanes
A mixture of macrocyclic phenanthroline–CuI
complex 2 (1.0 equiv), alkyne (2.5 equiv), K2CO3 (3.75 equiv), and I2 (1.25 equiv) in dry
THF (6.25 mL/0.1
mmol of 2) was stirred at 60 °C under Ar for 48
h. The solution was cooled to rt, and CH2Cl2 (7.5 mL/0.1 mmol of 2), CH3CN (17.5 mL/0.1
mmol of 2), and NH3 aq (30%, 8.5 mL/0.1 mmol
of 2) were added. After stirring at rt overnight, the
solution was extracted with CH2Cl2. The organic
layer was dried over Na2SO4 and concentrated
in vacuo. The residue was purified by column chromatography and GPC.
Synthesis of 4g by the Removal of the Fmoc Group
from 4e
A solution of 4e (72 mg,
0.030 mmol) in diethylamine (0.10 mL), acetonitrile (2.0 mL), and
dichloromethane (8.0 mL) was stirred at rt under Ar for 4 h. To the
mixture was added water, and the mixture was extracted with CH2Cl2 (3 × 3 mL). The combined organic layer
was washed with brine, dried over Na2SO4, and
concentrated in vacuo. The residue was purified by silica gel column
chromatography (hexane/AcOEt = 1/1) and GPC to yield 4g (49 mg, 0.025 mmol, 84%) as a white solid.
Preparation and Observation
of the 1H NMR Spectrum
of 4f-
A solution of 4f (27 mg, 0.014 mmol) in CH3OD (99 atom % D, 1.2 mL) and anhydrous dichloromethane (1.2 mL) was
stirred at rt under Ar overnight. Volatiles were removed under reduced
pressure to yield the desired deuterated compound, 4f- (26 mg, 0.014 mmol, quint,
78 atom % D of the N–D bond, estimated by 1H NMR
in CDCl3) as a light yellow solid.In order to reduce
the deuteration loss due to water and possible residual acidic impurities
in the solvent used for recording NMR, it was imperative to include
a simple pre-treatment for these solvents. NMR solvents (CDCl3 for confirming deuteration and deuterated toluene-d8 for VT NMR experiments) were thoroughly washed
with equal volume of D2O followed by drying over sodium
sulfate before use.
X-ray Diffraction Studies
A suitable
single crystal
was selected in Fomblin Y perfluoropolyether (HVAC 140/13) at ambient
temperature. All diffraction data were collected at −173 °C
on a Bruker Apex II Ultra X-ray diffractometer equipped with a Mo
Kα radiation (λ = 0.71073 Å) source. Intensity data
were processed using the Apex3 software suite. The solution of the
structures and the corresponding refinements were carried out using
the Yadokari-XG[31] graphical interface.
The positions of the non-hydrogen atoms were determined by using the
SHELXT-2014/5 and 2018/2[32] program and
refined on F2 by the full-matrix least-squares
technique using the SHELXL-2018/3[33] program.
All non-hydrogen atoms were refined with anisotropic thermal parameters,
while all hydrogen atoms were placed using AFIX instructions.Compound 4a(a): C128H96N2O4·2(toluene)·(hexane). Single
crystals for X-ray diffraction were grown from toluene/hexane solution.
The diffraction data are summarized in Table S1.Compound 4a(b): C128H96N2O4·CHCl3·(solvents).
Single crystals for X-ray diffraction were grown from CHCl3/MTBE solution. Accessible voids were found in the unit cell. Attempts
to model the solvent molecules (CHCl3, MTBE, and/or H2O) were not successful due to heavy disorder of the molecules.
The diffuse electron density associated with the solvent molecules
was removed by the PLATON/SQUEEZE[34] program.
The diffraction data are summarized in Table S2.
Authors: Anne-Marie L Fuller; David A Leigh; Paul J Lusby; Alexandra M Z Slawin; D Barney Walker Journal: J Am Chem Soc Date: 2005-09-14 Impact factor: 15.419
Authors: Levon D Movsisyan; Dmitry V Kondratuk; Michael Franz; Amber L Thompson; Rik R Tykwinski; Harry L Anderson Journal: Org Lett Date: 2012-06-18 Impact factor: 6.005
Authors: Michael Franz; Johanna A Januszewski; Dominik Wendinger; Christian Neiss; Levon D Movsisyan; Frank Hampel; Harry L Anderson; Andreas Görling; Rik R Tykwinski Journal: Angew Chem Int Ed Engl Date: 2015-04-27 Impact factor: 15.336
Authors: Levon D Movsisyan; Martin D Peeks; Gregory M Greetham; Michael Towrie; Amber L Thompson; Anthony W Parker; Harry L Anderson Journal: J Am Chem Soc Date: 2014-12-18 Impact factor: 15.419