Literature DB >> 28054092

Facile functionalization at the C4 position of pyrimidine nucleosides via amide group activation with (benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (BOP) and biological evaluations of the products.

Hari K Akula1, Hariprasad Kokatla2, Graciela Andrei3, Robert Snoeck3, Dominique Schols3, Jan Balzarini3, Lijia Yang2, Mahesh K Lakshman1.   

Abstract

Reactions of O-t-butyldimethylsilyl-protected thymidine, 2'-deoxyuridine, and 3'-azidothymidine (AZT) with (benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (BOP) leads to activation of the C4 amide carbonyl by formation of putative O4-(benzotriazol-1-yl) derivatives. Subsequent substitution with alkyl and aryl amines, thiols, and alcohols leads to facile functionalization at this position. Reactions with amines and thiols were conducted either as a two-step, one-pot transformation, or as a one-step conversion. Reactions with alcohols were conducted as two-step, one-pot transformations. In the course of these investigations, the formation of 1-(4-pyrimidinyl)-1H-benzotriazole-3-oxide derivatives from the pyrimidine nucleosides was identified. However, these too underwent conversion to the desired products. Products obtained from AZT were converted to the 3'-amino derivatives by catalytic reduction. All products were assayed for their abilities to inhibit cancer cell proliferation and for antiviral activities. Many were seen to be active against HIV-1 and HIV-2, and one was active against herpes simplex virus-1 (HSV-1).

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Year:  2017        PMID: 28054092      PMCID: PMC5367150          DOI: 10.1039/c6ob02334g

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  29 in total

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2.  Pyrenylmethyldeoxyadenosine: a 3'-cap for universal DNA hybridization probes.

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Journal:  Chemistry       Date:  2009       Impact factor: 5.236

3.  Synthesis and solution conformation studies of the modified nucleoside N(4),2'-O-dimethylcytidine (m(4)Cm) and its analogues.

Authors:  Santosh K Mahto; Christine S Chow
Journal:  Bioorg Med Chem       Date:  2008-09-09       Impact factor: 3.641

4.  Nature of side-reactions in oligonucleotide synthesis involving arenesulphonyl derivatives of 3-nitro-1,2,4-triazole and related condensing agents.

Authors:  C B Reese; A Ubasawa
Journal:  Nucleic Acids Symp Ser       Date:  1980

5.  A novel polymer supported approach to nucleoside modification.

Authors:  Suyeal Bae; Mahesh K Lakshman
Journal:  J Org Chem       Date:  2008-04-23       Impact factor: 4.354

6.  Nucleic acid related compounds. 1. Methylation and transformation of 4-methoxy-2-pyrimidinone 1- -D-ribofuranoside into 2'-O-methyl nucleoside components of ribonucleic acid, their analogs, and derivatives.

Authors:  M J Robins; S R Naik
Journal:  Biochemistry       Date:  1971-09-14       Impact factor: 3.162

7.  Alkyl addition reaction of pyrimidine 2'-ketonucleosides: synthesis of 2'-branched-chain sugar pyrimidine nucleosides (nucleosides and nucleotides. LXXXI.

Authors:  A Matsuda; H Itoh; K Takenuki; T Sasaki; T Ueda
Journal:  Chem Pharm Bull (Tokyo)       Date:  1988-03       Impact factor: 1.645

8.  A simple method for C-6 modification of guanine nucleosides.

Authors:  Mahesh K Lakshman; Josh Frank
Journal:  Org Biomol Chem       Date:  2009-06-01       Impact factor: 3.876

9.  A novel bis(pinacolato)diboron-mediated N-O bond deoxygenative route to C6 benzotriazolyl purine nucleoside derivatives.

Authors:  Vikram Basava; Lijia Yang; Padmanava Pradhan; Mahesh K Lakshman
Journal:  Org Biomol Chem       Date:  2016-07-05       Impact factor: 3.876

10.  Development of new amination reaction at 4-position of pyrimidine nucleosides.

Authors:  Katsutoshi Tsuchiya; Hironori Komatsu
Journal:  Nucleic Acids Res Suppl       Date:  2002
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1.  Synthesis of Pyrimidine Conjugates with 4-(6-Amino-hexanoyl)-7,8-difluoro-3,4-dihydro-3-methyl-2H-[1,4]benzoxazine and Evaluation of Their Antiviral Activity.

Authors:  Victor P Krasnov; Vera V Musiyak; Galina L Levit; Dmitry A Gruzdev; Valeriya L Andronova; Georgii A Galegov; Iana R Orshanskaya; Ekaterina O Sinegubova; Vladimir V Zarubaev; Valery N Charushin
Journal:  Molecules       Date:  2022-06-30       Impact factor: 4.927

2.  Facile Modifications at the C4 Position of Pyrimidine Nucleosides via In Situ Amide Activation with 1H-Benzotriazol-1-yloxy-tris(dimethyl-amino)phosphonium Hexafluorophosphate.

Authors:  Hari K Akula; Mahesh K Lakshman
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2019-01-28

3.  Synthesis and Evaluations of "1,4-Triazolyl Combretacoumarins" and Desmethoxy Analogues.

Authors:  Tashrique A Khandaker; Jessica D Hess; Renato Aguilera; Graciela Andrei; Robert Snoeck; Dominique Schols; Padmanava Pradhan; Mahesh K Lakshman
Journal:  European J Org Chem       Date:  2019-08-07

4.  Alkylated benzimidazoles: Design, synthesis, docking, DFT analysis, ADMET property, molecular dynamics and activity against HIV and YFV.

Authors:  Ritika Srivastava; Sunil K Gupta; Farha Naaz; Parth Sarthi Sen Gupta; Madhu Yadav; Vishal Kumar Singh; Anuradha Singh; Malay Kumar Rana; Satish Kumar Gupta; Dominique Schols; Ramendra K Singh
Journal:  Comput Biol Chem       Date:  2020-10-06       Impact factor: 2.877

5.  An Improved Approach for Practical Synthesis of 5-Hydroxymethyl-2'-deoxycytidine (5hmdC) Phosphoramidite and Triphosphate.

Authors:  Dong-Zhao Yang; Zhen-Zhen Chen; Mei Chi; Ying-Ying Dong; Shou-Zhi Pu; Qi Sun
Journal:  Molecules       Date:  2022-01-24       Impact factor: 4.411

  5 in total

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