Literature DB >> 28040635

Alternating access mechanisms of LeuT-fold transporters: trailblazing towards the promised energy landscapes.

Kelli Kazmier1, Derek P Claxton2, Hassane S Mchaourab3.   

Abstract

Secondary active transporters couple the uphill translocation of substrates to electrochemical ion gradients. Transporter conformational motion, generically referred to as alternating access, enables a central ligand binding site to change its orientation relative to the membrane. Here we review themes of alternating access and the transduction of ion gradient energy to power this process in the LeuT-fold class of transporters where crystallographic, computational and spectroscopic approaches have converged to yield detailed models of transport cycles. Specifically, we compare findings for the Na+-coupled amino acid transporter LeuT and the Na+-coupled hydantoin transporter Mhp1. Although these studies have illuminated multiple aspects of transporter structures and dynamics, a number of questions remain unresolved that so far hinder understanding transport mechanisms in an energy landscape perspective.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 28040635      PMCID: PMC5491374          DOI: 10.1016/j.sbi.2016.12.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  51 in total

1.  Identification of a chloride ion binding site in Na+/Cl -dependent transporters.

Authors:  Lucy R Forrest; Sotiria Tavoulari; Yuan-Wei Zhang; Gary Rudnick; Barry Honig
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-24       Impact factor: 11.205

2.  The mechanism of a neurotransmitter:sodium symporter--inward release of Na+ and substrate is triggered by substrate in a second binding site.

Authors:  Lei Shi; Matthias Quick; Yongfang Zhao; Harel Weinstein; Jonathan A Javitch
Journal:  Mol Cell       Date:  2008-06-20       Impact factor: 17.970

3.  Conformational cycle and ion-coupling mechanism of the Na+/hydantoin transporter Mhp1.

Authors:  Kelli Kazmier; Shruti Sharma; Shahidul M Islam; Benoît Roux; Hassane S Mchaourab
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-29       Impact factor: 11.205

4.  Simple allosteric model for membrane pumps.

Authors:  O Jardetzky
Journal:  Nature       Date:  1966-08-27       Impact factor: 49.962

5.  X-ray structures of LeuT in substrate-free outward-open and apo inward-open states.

Authors:  Harini Krishnamurthy; Eric Gouaux
Journal:  Nature       Date:  2012-01-09       Impact factor: 49.962

Review 6.  Structural Symmetry in Membrane Proteins.

Authors:  Lucy R Forrest
Journal:  Annu Rev Biophys       Date:  2015       Impact factor: 12.981

7.  Mechanism of chloride interaction with neurotransmitter:sodium symporters.

Authors:  Elia Zomot; Annie Bendahan; Matthias Quick; Yongfang Zhao; Jonathan A Javitch; Baruch I Kanner
Journal:  Nature       Date:  2007-08-19       Impact factor: 49.962

8.  Antidepressant binding site in a bacterial homologue of neurotransmitter transporters.

Authors:  Satinder K Singh; Atsuko Yamashita; Eric Gouaux
Journal:  Nature       Date:  2007-08-08       Impact factor: 49.962

9.  Alternating-access mechanism in conformationally asymmetric trimers of the betaine transporter BetP.

Authors:  Camilo Perez; Caroline Koshy; Ozkan Yildiz; Christine Ziegler
Journal:  Nature       Date:  2012-09-02       Impact factor: 49.962

10.  Molecular basis of alternating access membrane transport by the sodium-hydantoin transporter Mhp1.

Authors:  Tatsuro Shimamura; Simone Weyand; Oliver Beckstein; Nicholas G Rutherford; Jonathan M Hadden; David Sharples; Mark S P Sansom; So Iwata; Peter J F Henderson; Alexander D Cameron
Journal:  Science       Date:  2010-04-23       Impact factor: 47.728

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  29 in total

1.  Yeast and human P4-ATPases transport glycosphingolipids using conserved structural motifs.

Authors:  Bartholomew P Roland; Tomoki Naito; Jordan T Best; Cayetana Arnaiz-Yépez; Hiroyuki Takatsu; Roger J Yu; Hye-Won Shin; Todd R Graham
Journal:  J Biol Chem       Date:  2018-12-10       Impact factor: 5.157

Review 2.  Recent developments in nucleobase cation symporter-1 (NCS1) family transport proteins from bacteria, archaea, fungi and plants.

Authors:  Simon G Patching
Journal:  J Biosci       Date:  2018-09       Impact factor: 1.826

3.  Emerging Diversity in Lipid-Protein Interactions.

Authors:  Valentina Corradi; Besian I Sejdiu; Haydee Mesa-Galloso; Haleh Abdizadeh; Sergei Yu Noskov; Siewert J Marrink; D Peter Tieleman
Journal:  Chem Rev       Date:  2019-02-13       Impact factor: 60.622

4.  Mapping of Ion and Substrate Binding Sites in Human Sodium Iodide Symporter (hNIS).

Authors:  Hristina R Zhekova; Toshie Sakuma; Ryan Johnson; Susanna C Concilio; Patrycja J Lech; Igor Zdravkovic; Mirna Damergi; Lukkana Suksanpaisan; Kah-Whye Peng; Stephen J Russell; Sergei Noskov
Journal:  J Chem Inf Model       Date:  2020-03-12       Impact factor: 4.956

5.  Integrated AlphaFold2 and DEER investigation of the conformational dynamics of a pH-dependent APC antiporter.

Authors:  Diego Del Alamo; Lillian DeSousa; Rahul M Nair; Suhaila Rahman; Jens Meiler; Hassane S Mchaourab
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-15       Impact factor: 12.779

Review 6.  General principles of secondary active transporter function.

Authors:  Oliver Beckstein; Fiona Naughton
Journal:  Biophys Rev (Melville)       Date:  2022-03-29

7.  The Multidrug Transporter MdfA Deviates from the Canonical Model of Alternating Access of MFS Transporters.

Authors:  Eliane H Yardeni; Smriti Mishra; Richard A Stein; Eitan Bibi; Hassane S Mchaourab
Journal:  J Mol Biol       Date:  2020-08-26       Impact factor: 5.469

Review 8.  Heteromeric Solute Carriers: Function, Structure, Pathology and Pharmacology.

Authors:  Stephen J Fairweather; Nishank Shah; Stefan Brӧer
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

9.  Identification of multiple substrate binding sites in SLC4 transporters in the outward-facing conformation: insights into the transport mechanism.

Authors:  Hristina R Zhekova; Alexander Pushkin; Gülru Kayık; Liyo Kao; Rustam Azimov; Natalia Abuladze; Debra Kurtz; Mirna Damergi; Sergei Noskov; Ira Kurtz
Journal:  J Biol Chem       Date:  2021-04-28       Impact factor: 5.157

10.  The Structure and Mechanism of Drug Transporters.

Authors:  Arthur G Roberts
Journal:  Methods Mol Biol       Date:  2021
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