Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Quantitative predictions of protein interactions with long noncoding RNAs.

Literature DB >> 28032625

Quantitative predictions of protein interactions with long noncoding RNAs.

Davide Cirillo^1,2, Mario Blanco³, Alexandros Armaos^1,2, Andreas Buness⁴, Philip Avner⁴, Mitchell Guttman³, Andrea Cerase⁴, Gian Gaetano Tartaglia^1,2,5.

Abstract

Mesh：

Substances：

Year: 2016 PMID： 28032625 DOI： 10.1038/nmeth.4100

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

× No keyword cloud information.

8 in total

1. Predicting protein associations with long noncoding RNAs.

Authors: Matteo Bellucci; Federico Agostini; Marianela Masin; Gian Gaetano Tartaglia
Journal: Nat Methods Date: 2011-06 Impact factor: 28.547

2. Systematic discovery of Xist RNA binding proteins.

Authors: Ci Chu; Qiangfeng Cliff Zhang; Simão Teixeira da Rocha; Ryan A Flynn; Maheetha Bharadwaj; J Mauro Calabrese; Terry Magnuson; Edith Heard; Howard Y Chang
Journal: Cell Date: 2015-04-02 Impact factor: 41.582

3. The landscape of long noncoding RNAs in the human transcriptome.

Authors: Matthew K Iyer; Yashar S Niknafs; Rohit Malik; Udit Singhal; Anirban Sahu; Yasuyuki Hosono; Terrence R Barrette; John R Prensner; Joseph R Evans; Shuang Zhao; Anton Poliakov; Xuhong Cao; Saravana M Dhanasekaran; Yi-Mi Wu; Dan R Robinson; David G Beer; Felix Y Feng; Hariharan K Iyer; Arul M Chinnaiyan
Journal: Nat Genet Date: 2015-01-19 Impact factor: 38.330

4. A Pooled shRNA Screen Identifies Rbm15, Spen, and Wtap as Factors Required for Xist RNA-Mediated Silencing.

Authors: Benoit Moindrot; Andrea Cerase; Heather Coker; Osamu Masui; Anne Grijzenhout; Greta Pintacuda; Lothar Schermelleh; Tatyana B Nesterova; Neil Brockdorff
Journal: Cell Rep Date: 2015-07-16 Impact factor: 9.423

5. Identification of Spen as a Crucial Factor for Xist Function through Forward Genetic Screening in Haploid Embryonic Stem Cells.

Authors: Asun Monfort; Giulio Di Minin; Andreas Postlmayr; Remo Freimann; Fabiana Arieti; Stéphane Thore; Anton Wutz
Journal: Cell Rep Date: 2015-07-16 Impact factor: 9.423

6. Robust transcriptome-wide discovery of RNA-binding protein binding sites with enhanced CLIP (eCLIP).

Authors: Eric L Van Nostrand; Gabriel A Pratt; Alexander A Shishkin; Chelsea Gelboin-Burkhart; Mark Y Fang; Balaji Sundararaman; Steven M Blue; Thai B Nguyen; Christine Surka; Keri Elkins; Rebecca Stanton; Frank Rigo; Mitchell Guttman; Gene W Yeo
Journal: Nat Methods Date: 2016-03-28 Impact factor: 28.547

7. Chromosomes. A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation.

Authors: Anand Minajigi; John Froberg; Chunyao Wei; Hongjae Sunwoo; Barry Kesner; David Colognori; Derek Lessing; Bernhard Payer; Myriam Boukhali; Wilhelm Haas; Jeannie T Lee
Journal: Science Date: 2015-06-18 Impact factor: 47.728

8. The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3.

Authors: Colleen A McHugh; Chun-Kan Chen; Amy Chow; Christine F Surka; Christina Tran; Patrick McDonel; Amy Pandya-Jones; Mario Blanco; Christina Burghard; Annie Moradian; Michael J Sweredoski; Alexander A Shishkin; Julia Su; Eric S Lander; Sonja Hess; Kathrin Plath; Mitchell Guttman
Journal: Nature Date: 2015-04-27 Impact factor: 49.962

8 in total

49 in total

1. The moonlighting RNA-binding activity of cytosolic serine hydroxymethyltransferase contributes to control compartmentalization of serine metabolism.

Authors: Giulia Guiducci; Alessio Paone; Angela Tramonti; Giorgio Giardina; Serena Rinaldo; Amani Bouzidi; Maria C Magnifico; Marina Marani; Javier A Menendez; Alessandro Fatica; Alberto Macone; Alexandros Armaos; Gian G Tartaglia; Roberto Contestabile; Alessandro Paiardini; Francesca Cutruzzolà
Journal: Nucleic Acids Res Date: 2019-05-07 Impact factor: 16.971

2. Individually double minimum-distance definition of protein-RNA binding residues and application to structure-based prediction.

Authors: Wen Hu; Liu Qin; Menglong Li; Xuemei Pu; Yanzhi Guo
Journal: J Comput Aided Mol Des Date: 2018-11-26 Impact factor: 3.686

3. Structural analysis of SARS-CoV-2 genome and predictions of the human interactome.

Authors: Andrea Vandelli; Michele Monti; Edoardo Milanetti; Alexandros Armaos; Jakob Rupert; Elsa Zacco; Elias Bechara; Riccardo Delli Ponti; Gian Gaetano Tartaglia
Journal: Nucleic Acids Res Date: 2020-11-18 Impact factor: 16.971

4. Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs.

Authors: Diogo M Ribeiro; Andreas Zanzoni; Andrea Cipriano; Riccardo Delli Ponti; Lionel Spinelli; Monica Ballarino; Irene Bozzoni; Gian Gaetano Tartaglia; Christine Brun
Journal: Nucleic Acids Res Date: 2018-01-25 Impact factor: 16.971

5. Xist Deletional Analysis Reveals an Interdependency between Xist RNA and Polycomb Complexes for Spreading along the Inactive X.

Authors: David Colognori; Hongjae Sunwoo; Andrea J Kriz; Chen-Yu Wang; Jeannie T Lee
Journal: Mol Cell Date: 2019-02-28 Impact factor: 17.970

6. Posttranscriptional regulation of colonic epithelial repair by RNA binding protein IMP1/IGF2BP1.

Authors: Priya Chatterji; Patrick A Williams; Kelly A Whelan; Fernando C Samper; Sarah F Andres; Lauren A Simon; Louis R Parham; Rei Mizuno; Emma T Lundsmith; David Sm Lee; Shun Liang; Hr Sagara Wijeratne; Stefanie Marti; Lillian Chau; Veronique Giroux; Benjamin J Wilkins; Gary D Wu; Premal Shah; Gian G Tartaglia; Kathryn E Hamilton
Journal: EMBO Rep Date: 2019-05-06 Impact factor: 8.807