Literature DB >> 28029159

Is a super-enhancer greater than the sum of its parts?

Noah Dukler1, Brad Gulko1,2, Yi-Fei Huang1, Adam Siepel1.   

Abstract

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Year:  2016        PMID: 28029159      PMCID: PMC5379849          DOI: 10.1038/ng.3759

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


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  9 in total

1.  Quantitatively predictable control of Drosophila transcriptional enhancers in vivo with engineered transcription factors.

Authors:  Justin Crocker; Garth R Ilsley; David L Stern
Journal:  Nat Genet       Date:  2016-02-08       Impact factor: 38.330

2.  What are super-enhancers?

Authors:  Sebastian Pott; Jason D Lieb
Journal:  Nat Genet       Date:  2015-01       Impact factor: 38.330

3.  Super-enhancers in the control of cell identity and disease.

Authors:  Denes Hnisz; Brian J Abraham; Tong Ihn Lee; Ashley Lau; Violaine Saint-André; Alla A Sigova; Heather A Hoke; Richard A Young
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

Review 4.  The selection and function of cell type-specific enhancers.

Authors:  Sven Heinz; Casey E Romanoski; Christopher Benner; Christopher K Glass
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-04       Impact factor: 94.444

5.  Master transcription factors and mediator establish super-enhancers at key cell identity genes.

Authors:  Warren A Whyte; David A Orlando; Denes Hnisz; Brian J Abraham; Charles Y Lin; Michael H Kagey; Peter B Rahl; Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-04-11       Impact factor: 41.582

6.  Napoleon Is in Equilibrium.

Authors:  Rob Phillips
Journal:  Annu Rev Condens Matter Phys       Date:  2015-03       Impact factor: 16.109

7.  Genetic dissection of the α-globin super-enhancer in vivo.

Authors:  Christian Babbs; James O J Davies; Bryony J Graham; Lars Hanssen; Mira T Kassouf; A Marieke Marieke Oudelaar; Jacqueline A Sharpe; Maria C Suciu; Jelena Telenius; Ruth Williams; Deborah Hay; Jim R Hughes; Christina Rode; Pik-Shan Li; Len A Pennacchio; Jacqueline A Sloane-Stanley; Helena Ayyub; Sue Butler; Tatjana Sauka-Spengler; Richard J Gibbons; Andrew J H Smith; William G Wood; Douglas R Higgs
Journal:  Nat Genet       Date:  2016-07-04       Impact factor: 38.330

Review 8.  From biophysics to evolutionary genetics: statistical aspects of gene regulation.

Authors:  Michael Lässig
Journal:  BMC Bioinformatics       Date:  2007-09-27       Impact factor: 3.169

9.  Hierarchy within the mammary STAT5-driven Wap super-enhancer.

Authors:  Ha Youn Shin; Michaela Willi; Kyung HyunYoo; Xianke Zeng; Chaochen Wang; Gil Metser; Lothar Hennighausen
Journal:  Nat Genet       Date:  2016-07-04       Impact factor: 38.330

  9 in total
  28 in total

Review 1.  Enhancer redundancy in development and disease.

Authors:  Evgeny Z Kvon; Zeba Wunderlich; Rachel Waymack; Mario Gad
Journal:  Nat Rev Genet       Date:  2021-01-12       Impact factor: 53.242

2.  Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers.

Authors:  Aziz Khan; Anthony Mathelier; Xuegong Zhang
Journal:  Epigenetics       Date:  2018-10-11       Impact factor: 4.528

3.  PAX3-FOXO1 Establishes Myogenic Super Enhancers and Confers BET Bromodomain Vulnerability.

Authors:  Berkley E Gryder; Marielle E Yohe; Hsien-Chao Chou; Xiaohu Zhang; Joana Marques; Marco Wachtel; Beat Schaefer; Nirmalya Sen; Young Song; Alberto Gualtieri; Silvia Pomella; Rossella Rota; Abigail Cleveland; Xinyu Wen; Sivasish Sindiri; Jun S Wei; Frederic G Barr; Sudipto Das; Thorkell Andresson; Rajarshi Guha; Madhu Lal-Nag; Marc Ferrer; Jack F Shern; Keji Zhao; Craig J Thomas; Javed Khan
Journal:  Cancer Discov       Date:  2017-04-26       Impact factor: 39.397

4.  EpiRegio: analysis and retrieval of regulatory elements linked to genes.

Authors:  Nina Baumgarten; Dennis Hecker; Sivarajan Karunanithi; Florian Schmidt; Markus List; Marcel H Schulz
Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

5.  Signal Integration by Shadow Enhancers and Enhancer Duplications Varies across the Drosophila Embryo.

Authors:  Clarissa Scholes; Kelly M Biette; Timothy T Harden; Angela H DePace
Journal:  Cell Rep       Date:  2019-02-26       Impact factor: 9.423

6.  Temporal enhancer profiling of parallel lineages identifies AHR and GLIS1 as regulators of mesenchymal multipotency.

Authors:  Deborah Gérard; Florian Schmidt; Aurélien Ginolhac; Martine Schmitz; Rashi Halder; Peter Ebert; Marcel H Schulz; Thomas Sauter; Lasse Sinkkonen
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

7.  Evidence for additive and synergistic action of mammalian enhancers during cell fate determination.

Authors:  Jinmi Choi; Kseniia Lysakovskaia; Gregoire Stik; Carina Demel; Johannes Söding; Tian V Tian; Thomas Graf; Patrick Cramer
Journal:  Elife       Date:  2021-03-26       Impact factor: 8.140

8.  Multiplex Enhancer Interference Reveals Collaborative Control of Gene Regulation by Estrogen Receptor α-Bound Enhancers.

Authors:  Julia B Carleton; Kristofer C Berrett; Jason Gertz
Journal:  Cell Syst       Date:  2017-09-27       Impact factor: 10.304

9.  cis-Regulatory Circuits Regulating NEK6 Kinase Overexpression in Transformed B Cells Are Super-Enhancer Independent.

Authors:  Yue Huang; Olivia I Koues; Jiang-Yang Zhao; Regina Liu; Sarah C Pyfrom; Jacqueline E Payton; Eugene M Oltz
Journal:  Cell Rep       Date:  2017-03-21       Impact factor: 9.423

Review 10.  'Enhancing' red cell fate through epigenetic mechanisms.

Authors:  Marlies P Rossmann; Leonard I Zon
Journal:  Curr Opin Hematol       Date:  2021-05-01       Impact factor: 3.284

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