Literature DB >> 28027002

Mathematical modeling based on ordinary differential equations: A promising approach to vaccinology.

Carla Rezende Barbosa Bonin1, Guilherme Cortes Fernandes2, Rodrigo Weber Dos Santos1, Marcelo Lobosco1.   

Abstract

New contributions that aim to accelerate the development or to improve the efficacy and safety of vaccines arise from many different areas of research and technology. One of these areas is computational science, which traditionally participates in the initial steps, such as the pre-screening of active substances that have the potential to become a vaccine antigen. In this work, we present another promising way to use computational science in vaccinology: mathematical and computational models of important cell and protein dynamics of the immune system. A system of Ordinary Differential Equations represents different immune system populations, such as B cells and T cells, antigen presenting cells and antibodies. In this way, it is possible to simulate, in silico, the immune response to vaccines under development or under study. Distinct scenarios can be simulated by varying parameters of the mathematical model. As a proof of concept, we developed a model of the immune response to vaccination against the yellow fever. Our simulations have shown consistent results when compared with experimental data available in the literature. The model is generic enough to represent the action of other diseases or vaccines in the human immune system, such as dengue and Zika virus.

Entities:  

Keywords:  computational immunology; computational modeling; computational science; computational vaccinology; immune system; ordinary differential equations; yellow fever

Mesh:

Substances:

Year:  2016        PMID: 28027002      PMCID: PMC5328209          DOI: 10.1080/21645515.2017.1264774

Source DB:  PubMed          Journal:  Hum Vaccin Immunother        ISSN: 2164-5515            Impact factor:   3.452


  27 in total

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Authors:  Birgit Schoeberl; Claudia Eichler-Jonsson; Ernst Dieter Gilles; Gertraud Müller
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2.  Computational modeling of arterial wall growth. Attempts towards patient-specific simulations based on computer tomography.

Authors:  E Kuhl; R Maas; G Himpel; A Menzel
Journal:  Biomech Model Mechanobiol       Date:  2006-11-22

3.  Three-dimensional computational modeling of multiple deformable cells flowing in microvessels.

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Review 4.  Computational modeling of the EGF-receptor system: a paradigm for systems biology.

Authors:  H Steven Wiley; Stanislav Y Shvartsman; Douglas A Lauffenburger
Journal:  Trends Cell Biol       Date:  2003-01       Impact factor: 20.808

5.  A whole-cell computational model predicts phenotype from genotype.

Authors:  Jonathan R Karr; Jayodita C Sanghvi; Derek N Macklin; Miriam V Gutschow; Jared M Jacobs; Benjamin Bolival; Nacyra Assad-Garcia; John I Glass; Markus W Covert
Journal:  Cell       Date:  2012-07-20       Impact factor: 41.582

6.  The Use of Reverse Vaccinology and Molecular Modeling Associated with Cell Proliferation Stimulation Approach to Select Promiscuous Epitopes from Schistosoma mansoni.

Authors:  Flávio M Oliveira; Ivan E V Coelho; Marcelo D Lopes; Alex G Taranto; Moacyr C Junior; Luciana L D Santos; José A P F Villar; Cristina T Fonseca; Débora D O Lopes
Journal:  Appl Biochem Biotechnol       Date:  2016-03-16       Impact factor: 2.926

Review 7.  From genome to vaccine: in silico predictions, ex vivo verification.

Authors:  A S De Groot; A Bosma; N Chinai; J Frost; B M Jesdale; M A Gonzalez; W Martin; C Saint-Aubin
Journal:  Vaccine       Date:  2001-08-14       Impact factor: 3.641

8.  Ligand-based virtual screen for the discovery of novel M5 inhibitor chemotypes.

Authors:  Alexander R Geanes; Hykeyung P Cho; Kellie D Nance; Kevin M McGowan; P Jeffrey Conn; Carrie K Jones; Jens Meiler; Craig W Lindsley
Journal:  Bioorg Med Chem Lett       Date:  2016-07-30       Impact factor: 2.823

9.  Development of a full-length cDNA-derived enterovirus A71 vaccine candidate using reverse genetics technology.

Authors:  Ya-Ting Yang; Yen-Hung Chow; Kuang-Nan Hsiao; Kai-Chieh Hu; Jen-Ron Chiang; Suh-Chin Wu; Pele Chong; Chia-Chyi Liu
Journal:  Antiviral Res       Date:  2016-07-04       Impact factor: 5.970

10.  Discovery of Novel Inhibitors Targeting the Menin-Mixed Lineage Leukemia Interface Using Pharmacophore- and Docking-Based Virtual Screening.

Authors:  Yuan Xu; Liyan Yue; Yulan Wang; Jing Xing; Zhifeng Chen; Zhe Shi; Rongfeng Liu; Yu-Chih Liu; Xiaomin Luo; Hualiang Jiang; Kaixian Chen; Cheng Luo; Mingyue Zheng
Journal:  J Chem Inf Model       Date:  2016-08-24       Impact factor: 4.956

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  1 in total

1.  A qualitatively validated mathematical-computational model of the immune response to the yellow fever vaccine.

Authors:  Carla R B Bonin; Guilherme C Fernandes; Rodrigo W Dos Santos; Marcelo Lobosco
Journal:  BMC Immunol       Date:  2018-05-25       Impact factor: 3.615

  1 in total

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