Literature DB >> 28010188

The in vivo genetic toolkit for studying expression and functions of Drosophila melanogaster microRNAs.

Hina Iftikhar1, Janna N Schultzhaus1, Chloe J Bennett1, Ginger E Carney1.   

Abstract

Since the initial reports that a group of small RNAs, now known as microRNAs (miRNAs), regulates gene expression without being translated into proteins, there has been an explosion of studies on these important expression modulators. Drosophila melanogaster has proven to be one of the most amenable animal models for investigations of miRNA biogenesis and gene regulatory activities. Here, we highlight the publicly available genetic tools and strategies for in vivo functional studies of miRNA activity in D. melanogaster. By coupling genetic approaches using available strain libraries with technologies for miRNA expression analysis and target and pathway prediction, researchers' ability to test functional activities of miRNAs in vivo is now greatly enhanced. We also comment on the tools that need to be developed to aid in comprehensive evaluation of Drosophila miRNA activities that impact traits of interest.

Entities:  

Keywords:  Drosophila melanogaster; genetics; in vivo; microRNA; tools

Mesh:

Substances:

Year:  2016        PMID: 28010188      PMCID: PMC5324739          DOI: 10.1080/15476286.2016.1272748

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  53 in total

1.  MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets.

Authors:  Yitzhak Friedman; Guy Naamati; Michal Linial
Journal:  Bioinformatics       Date:  2010-06-06       Impact factor: 6.937

2.  Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and short-interfering RNAs.

Authors:  Christopher K Raymond; Brian S Roberts; Phillip Garrett-Engele; Lee P Lim; Jason M Johnson
Journal:  RNA       Date:  2005-11       Impact factor: 4.942

3.  MicroRNA expression profiling using microarrays.

Authors:  Chang-Gong Liu; George Adrian Calin; Stefano Volinia; Carlo M Croce
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

4.  Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence.

Authors:  Eugene Berezikov; Nicolas Robine; Anastasia Samsonova; Jakub O Westholm; Ammar Naqvi; Jui-Hung Hung; Katsutomo Okamura; Qi Dai; Diane Bortolamiol-Becet; Raquel Martin; Yongjun Zhao; Phillip D Zamore; Gregory J Hannon; Marco A Marra; Zhiping Weng; Norbert Perrimon; Eric C Lai
Journal:  Genome Res       Date:  2010-12-22       Impact factor: 9.043

5.  microRNA target predictions across seven Drosophila species and comparison to mammalian targets.

Authors:  Dominic Grün; Yi-Lu Wang; David Langenberger; Kristin C Gunsalus; Nikolaus Rajewsky
Journal:  PLoS Comput Biol       Date:  2005-06-24       Impact factor: 4.475

6.  Real-time quantification of microRNAs by stem-loop RT-PCR.

Authors:  Caifu Chen; Dana A Ridzon; Adam J Broomer; Zhaohui Zhou; Danny H Lee; Julie T Nguyen; Maura Barbisin; Nan Lan Xu; Vikram R Mahuvakar; Mark R Andersen; Kai Qin Lao; Kenneth J Livak; Karl J Guegler
Journal:  Nucleic Acids Res       Date:  2005-11-27       Impact factor: 16.971

7.  Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines.

Authors:  Jiayu Wen; Jaaved Mohammed; Diane Bortolamiol-Becet; Harrison Tsai; Nicolas Robine; Jakub O Westholm; Erik Ladewig; Qi Dai; Katsutomo Okamura; Alex S Flynt; Dayu Zhang; Justen Andrews; Lucy Cherbas; Thomas C Kaufman; Peter Cherbas; Adam Siepel; Eric C Lai
Journal:  Genome Res       Date:  2014-07       Impact factor: 9.043

8.  Targeted gene expression as a means of altering cell fates and generating dominant phenotypes.

Authors:  A H Brand; N Perrimon
Journal:  Development       Date:  1993-06       Impact factor: 6.868

9.  Transgenic microRNA inhibition with spatiotemporal specificity in intact organisms.

Authors:  Carlos M Loya; Cecilia S Lu; David Van Vactor; Tudor A Fulga
Journal:  Nat Methods       Date:  2009-11-15       Impact factor: 28.547

10.  Targeted gene deletion of miRNAs in mice by TALEN system.

Authors:  Shuji Takada; Tempei Sato; Yoshiaki Ito; Satoshi Yamashita; Tomoko Kato; Miyuri Kawasumi; Masami Kanai-Azuma; Arisa Igarashi; Tomomi Kato; Moe Tamano; Hiroshi Asahara
Journal:  PLoS One       Date:  2013-10-16       Impact factor: 3.240

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  1 in total

1.  The Role of miRNAs in Drosophila melanogaster Male Courtship Behavior.

Authors:  Hina Iftikhar; Nicholas L Johnson; Matthew L Marlatt; Ginger E Carney
Journal:  Genetics       Date:  2019-01-25       Impact factor: 4.562

  1 in total

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