Literature DB >> 20529892

MiRror: a combinatorial analysis web tool for ensembles of microRNAs and their targets.

Yitzhak Friedman1, Guy Naamati, Michal Linial.   

Abstract

SUMMARY: The miRror application provides insights on microRNA (miRNA) regulation. It is based on the notion of a combinatorial regulation by an ensemble of miRNAs or genes. miRror integrates predictions from a dozen of miRNA resources that are based on complementary algorithms into a unified statistical framework. For miRNAs set as input, the online tool provides a ranked list of targets, based on set of resources selected by the user, according to their significance of being coordinately regulated. Symmetrically, a set of genes can be used as input to suggest a set of miRNAs. The user can restrict the analysis for the preferred tissue or cell line. miRror is suitable for analyzing results from miRNAs profiling, proteomics and gene expression arrays. AVAILABILITY: http://www.proto.cs.huji.ac.il/mirror

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Year:  2010        PMID： 20529892     DOI： 10.1093/bioinformatics/btq298

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  25 in total

Review 1.  miRNAs target databases: developmental methods and target identification techniques with functional annotations.

Authors:  Nagendra Kumar Singh
Journal:  Cell Mol Life Sci       Date:  2017-02-15       Impact factor: 9.261

2.  Intercellular nanovesicle-mediated microRNA transfer: a mechanism of environmental modulation of hepatocellular cancer cell growth.

Authors:  Takayuki Kogure; Wen-Lang Lin; Irene K Yan; Chiara Braconi; Tushar Patel
Journal:  Hepatology       Date:  2011-07-29       Impact factor: 17.425

3.  E2F1 induces miR-224/452 expression to drive EMT through TXNIP downregulation.

Authors:  Susanne Knoll; Katharina Fürst; Bhavani Kowtharapu; Ulf Schmitz; Stephan Marquardt; Olaf Wolkenhauer; Hubert Martin; Brigitte M Pützer
Journal:  EMBO Rep       Date:  2014-10-23       Impact factor: 8.807

Review 4.  The in vivo genetic toolkit for studying expression and functions of Drosophila melanogaster microRNAs.

Authors:  Hina Iftikhar; Janna N Schultzhaus; Chloe J Bennett; Ginger E Carney
Journal:  RNA Biol       Date:  2016-12-23       Impact factor: 4.652

Review 5.  MicroRNA Targeting.

Authors:  Hossein Ghanbarian; Mehmet Taha Yıldız; Yusuf Tutar
Journal:  Methods Mol Biol       Date:  2022

6.  miRNA changes in the mouse placenta due to bisphenol A exposure.

Authors:  Jiude Mao; Jessica A Kinkade; Nathan J Bivens; Cheryl S Rosenfeld
Journal:  Epigenomics       Date:  2021-11-29       Impact factor: 4.778

7.  mirDIP 4.1-integrative database of human microRNA target predictions.

Authors:  Tomas Tokar; Chiara Pastrello; Andrea E M Rossos; Mark Abovsky; Anne-Christin Hauschild; Mike Tsay; Richard Lu; Igor Jurisica
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

8.  Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach.

Authors:  Jiandong Ding; Danqing Li; Uwe Ohler; Jihong Guan; Shuigeng Zhou
Journal:  BMC Genomics       Date:  2012-06-11       Impact factor: 3.969

9.  Inferring the regulatory network behind a gene expression experiment.

Authors:  Marta Bleda; Ignacio Medina; Roberto Alonso; Alejandro De Maria; Francisco Salavert; Joaquin Dopazo
Journal:  Nucleic Acids Res       Date:  2012-06-11       Impact factor: 16.971

10.  Disruption of global hypothalamic microRNA (miR) profiles and associated behavioral changes in California mice (Peromyscus californicus) developmentally exposed to endocrine disrupting chemicals.

Authors:  Sarabjit Kaur; Jessica A Kinkade; Madison T Green; Rachel E Martin; Tess E Willemse; Nathan J Bivens; A Katrin Schenk; William G Helferich; Brian C Trainor; Joseph Fass; Matthew Settles; Jiude Mao; Cheryl S Rosenfeld
Journal:  Horm Behav       Date:  2020-11-30       Impact factor: 3.587
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