Literature DB >> 28009453

Reassigning stop codons via translation termination: How a few eukaryotes broke the dogma.

Elena Alkalaeva1, Tatiana Mikhailova1.   

Abstract

The genetic code determines how amino acids are encoded within mRNA. It is universal among the vast majority of organisms, although several exceptions are known. Variant genetic codes are found in ciliates, mitochondria, and numerous other organisms. All revealed genetic codes (standard and variant) have at least one codon encoding a translation stop signal. However, recently two new genetic codes with a reassignment of all three stop codons were revealed in studies examining the protozoa transcriptomes. Here, we discuss this finding and the recent studies of variant genetic codes in eukaryotes. We consider the possible molecular mechanisms allowing the use of certain codons as sense and stop signals simultaneously. The results obtained by studying these amazing organisms represent a new and exciting insight into the mechanism of stop codon decoding in eukaryotes. Also see the video abstract here.
© 2017 WILEY Periodicals, Inc.

Keywords:  PABP; genetic code; reassignment; stop codon; translation termination

Mesh:

Substances:

Year:  2016        PMID: 28009453     DOI: 10.1002/bies.201600213

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  9 in total

1.  Polyadenylate-binding protein-interacting proteins PAIP1 and PAIP2 affect translation termination.

Authors:  Alexandr Ivanov; Ekaterina Shuvalova; Tatiana Egorova; Alexey Shuvalov; Elizaveta Sokolova; Nikita Bizyaev; Ivan Shatsky; Ilya Terenin; Elena Alkalaeva
Journal:  J Biol Chem       Date:  2019-04-16       Impact factor: 5.157

Review 2.  Translation Elongation and Recoding in Eukaryotes.

Authors:  Thomas E Dever; Jonathan D Dinman; Rachel Green
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-08-01       Impact factor: 10.005

3.  Atomic mutagenesis of stop codon nucleotides reveals the chemical prerequisites for release factor-mediated peptide release.

Authors:  Thomas Philipp Hoernes; Nina Clementi; Michael Andreas Juen; Xinying Shi; Klaus Faserl; Jessica Willi; Catherina Gasser; Christoph Kreutz; Simpson Joseph; Herbert Lindner; Alexander Hüttenhofer; Matthias David Erlacher
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-03       Impact factor: 11.205

4.  Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes.

Authors:  Lisa K Johnson; Harriet Alexander; C Titus Brown
Journal:  Gigascience       Date:  2019-04-01       Impact factor: 6.524

Review 5.  Control of Translation at the Initiation Phase During Glucose Starvation in Yeast.

Authors:  Yoshika Janapala; Thomas Preiss; Nikolay E Shirokikh
Journal:  Int J Mol Sci       Date:  2019-08-19       Impact factor: 5.923

6.  Genome skimming is a low-cost and robust strategy to assemble complete mitochondrial genomes from ethanol preserved specimens in biodiversity studies.

Authors:  Bruna Trevisan; Daniel M C Alcantara; Denis Jacob Machado; Fernando P L Marques; Daniel J G Lahr
Journal:  PeerJ       Date:  2019-09-13       Impact factor: 2.984

7.  Single-Cell Transcriptomics Reveal a Correlation between Genome Architecture and Gene Family Evolution in Ciliates.

Authors:  Ying Yan; Xyrus X Maurer-Alcalá; Rob Knight; Sergei L Kosakovsky Pond; Laura A Katz
Journal:  mBio       Date:  2019-12-24       Impact factor: 7.867

8.  Stop Codon Usage as a Window into Genome Evolution: Mutation, Selection, Biased Gene Conversion and the TAG Paradox.

Authors:  Alexander T Ho; Laurence D Hurst
Journal:  Genome Biol Evol       Date:  2022-08-03       Impact factor: 4.065

9.  Diversity, evolution, and classification of virophages uncovered through global metagenomics.

Authors:  David Paez-Espino; Jinglie Zhou; Simon Roux; Stephen Nayfach; Georgios A Pavlopoulos; Frederik Schulz; Katherine D McMahon; David Walsh; Tanja Woyke; Natalia N Ivanova; Emiley A Eloe-Fadrosh; Susannah G Tringe; Nikos C Kyrpides
Journal:  Microbiome       Date:  2019-12-10       Impact factor: 14.650

  9 in total

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