Literature DB >> 28007144

Proteomics Research in Cardiovascular Medicine and Biomarker Discovery.

Maggie P Y Lam1, Peipei Ping2, Elizabeth Murphy3.   

Abstract

Proteomics is a systems physiology discipline to address the large-scale characterization of protein species within a biological system, be it a cell, a tissue, a body biofluid, an organism, or a cohort population. Building on advances from chemical analytical platforms (e.g., mass spectrometry and other technologies), proteomics approaches have contributed powerful applications in cardiovascular biomedicine, most notably in: 1) the discovery of circulating protein biomarkers of heart diseases from plasma samples; and 2) the identification of disease mechanisms and potential therapeutic targets in cardiovascular tissues, in both preclinical models and translational studies. Contemporary proteomics investigations offer powerful means to simultaneously examine tens of thousands of proteins in various samples, and understand their molecular phenotypes in health and disease. This concise review introduces study design considerations, example applications and use cases, as well as interpretation and analysis of proteomics data in cardiovascular biomedicine. Published by Elsevier Inc.

Entities:  

Keywords:  mass spectrometry; molecular phenotyping; post-translational modifications; protein arrays; protein signatures; protein dynamics

Mesh:

Substances:

Year:  2016        PMID: 28007144      PMCID: PMC5189682          DOI: 10.1016/j.jacc.2016.10.031

Source DB:  PubMed          Journal:  J Am Coll Cardiol        ISSN: 0735-1097            Impact factor:   24.094


  109 in total

1.  Early diagnosis of acute myocardial infarction based on assay for subforms of creatine kinase-MB.

Authors:  P R Puleo; P A Guadagno; R Roberts; M V Scheel; A J Marian; D Churchill; M B Perryman
Journal:  Circulation       Date:  1990-09       Impact factor: 29.690

Review 2.  Protein analysis by shotgun/bottom-up proteomics.

Authors:  Yaoyang Zhang; Bryan R Fonslow; Bing Shan; Moon-Chang Baek; John R Yates
Journal:  Chem Rev       Date:  2013-02-26       Impact factor: 60.622

3.  Selective deamidation of recombinant human stem cell factor during in vitro aging: isolation and characterization of the aspartyl and isoaspartyl homodimers and heterodimers.

Authors:  Y R Hsu; W C Chang; E A Mendiaz; S Hara; D T Chow; M B Mann; K E Langley; H S Lu
Journal:  Biochemistry       Date:  1998-02-24       Impact factor: 3.162

4.  Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma.

Authors:  Susan E Abbatiello; Birgit Schilling; D R Mani; Lisa J Zimmerman; Steven C Hall; Brendan MacLean; Matthew Albertolle; Simon Allen; Michael Burgess; Michael P Cusack; Mousumi Gosh; Victoria Hedrick; Jason M Held; H Dorota Inerowicz; Angela Jackson; Hasmik Keshishian; Christopher R Kinsinger; John Lyssand; Lee Makowski; Mehdi Mesri; Henry Rodriguez; Paul Rudnick; Pawel Sadowski; Nell Sedransk; Kent Shaddox; Stephen J Skates; Eric Kuhn; Derek Smith; Jeffery R Whiteaker; Corbin Whitwell; Shucha Zhang; Christoph H Borchers; Susan J Fisher; Bradford W Gibson; Daniel C Liebler; Michael J MacCoss; Thomas A Neubert; Amanda G Paulovich; Fred E Regnier; Paul Tempst; Steven A Carr
Journal:  Mol Cell Proteomics       Date:  2015-02-18       Impact factor: 5.911

5.  Characterization of the cardiac myosin binding protein-C phosphoproteome in healthy and failing human hearts.

Authors:  Viola Kooij; Ronald J Holewinski; Anne M Murphy; Jennifer E Van Eyk
Journal:  J Mol Cell Cardiol       Date:  2013-04-22       Impact factor: 5.000

6.  Aptamer-Based Proteomic Profiling Reveals Novel Candidate Biomarkers and Pathways in Cardiovascular Disease.

Authors:  Debby Ngo; Sumita Sinha; Dongxiao Shen; Eric W Kuhn; Michelle J Keyes; Xu Shi; Mark D Benson; John F O'Sullivan; Hasmik Keshishian; Laurie A Farrell; Michael A Fifer; Ramachandran S Vasan; Marc S Sabatine; Martin G Larson; Steven A Carr; Thomas J Wang; Robert E Gerszten
Journal:  Circulation       Date:  2016-07-26       Impact factor: 29.690

7.  Highly selective enrichment of phosphorylated peptides using titanium dioxide.

Authors:  Tine E Thingholm; Thomas J D Jørgensen; Ole N Jensen; Martin R Larsen
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

8.  Cyclophilin D modulates mitochondrial acetylome.

Authors:  Tiffany Tuyen M Nguyen; Renee Wong; Sara Menazza; Junhui Sun; Yong Chen; Guanghui Wang; Marjan Gucek; Charles Steenbergen; Michael N Sack; Elizabeth Murphy
Journal:  Circ Res       Date:  2013-09-23       Impact factor: 17.367

9.  Spotlite: web application and augmented algorithms for predicting co-complexed proteins from affinity purification--mass spectrometry data.

Authors:  Dennis Goldfarb; Bridgid E Hast; Wei Wang; Michael B Major
Journal:  J Proteome Res       Date:  2014-10-20       Impact factor: 4.466

10.  Neutron-encoded mass signatures for multiplexed proteome quantification.

Authors:  Alexander S Hebert; Anna E Merrill; Derek J Bailey; Amelia J Still; Michael S Westphall; Eric R Strieter; David J Pagliarini; Joshua J Coon
Journal:  Nat Methods       Date:  2013-02-24       Impact factor: 28.547

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  19 in total

1.  Cardiopoietic stem cell therapy restores infarction-altered cardiac proteome.

Authors:  D Kent Arrell; Christian S Rosenow; Satsuki Yamada; Atta Behfar; Andre Terzic
Journal:  NPJ Regen Med       Date:  2020-03-12

Review 2.  Somewhere over the sex differences rainbow of myocardial infarction remodeling: hormones, chromosomes, inflammasome, oh my.

Authors:  Kristine Y DeLeon-Pennell; Merry L Lindsey
Journal:  Expert Rev Proteomics       Date:  2019-09-11       Impact factor: 3.940

3.  Accelerating Biomarker Discovery Through Electronic Health Records, Automated Biobanking, and Proteomics.

Authors:  Quinn S Wells; Deepak K Gupta; J Gustav Smith; Sean P Collins; Alan B Storrow; Jane Ferguson; Maya Landenhed Smith; Jill M Pulley; Sarah Collier; Xiaoming Wang; Dan M Roden; Robert E Gerszten; Thomas J Wang
Journal:  J Am Coll Cardiol       Date:  2019-05-07       Impact factor: 24.094

4.  Differential Plasma Protein Regulation and Statin Effects in Human Immunodeficiency Virus (HIV)-Infected and Non-HIV-Infected Patients Utilizing a Proteomics Approach.

Authors:  Chris deFilippi; Mabel Toribio; Lai Ping Wong; Ruslan Sadreyev; Ida Grundberg; Kathleen V Fitch; Markella V Zanni; Janet Lo; Craig A Sponseller; Emmett Sprecher; Narges Rashidi; Melanie A Thompson; Diana Cagliero; Judith A Aberg; Laurie R Braun; Takara L Stanley; Hang Lee; Steven K Grinspoon
Journal:  J Infect Dis       Date:  2020-08-17       Impact factor: 5.226

Review 5.  Biomarkers in HFpEF for Diagnosis, Prognosis, and Biological Phenotyping.

Authors:  Moemen Eltelbany; Palak Shah; Christopher deFilippi
Journal:  Curr Heart Fail Rep       Date:  2022-10-05

6.  Cardiovascular mechanobiology-a Special Issue to look at the state of the art and the newest insights into the role of mechanical forces in cardiovascular development, physiology and disease.

Authors:  Pamela Swiatlowska; Thomas Iskratsch
Journal:  Biophys Rev       Date:  2021-09-11

7.  Phrase mining of textual data to analyze extracellular matrix protein patterns across cardiovascular disease.

Authors:  David A Liem; Sanjana Murali; Dibakar Sigdel; Yu Shi; Xuan Wang; Jiaming Shen; Howard Choi; John H Caufield; Wei Wang; Peipei Ping; JiaWei Han
Journal:  Am J Physiol Heart Circ Physiol       Date:  2018-05-18       Impact factor: 4.733

8.  Proteome-based identification of apolipoprotein A-IV as an early diagnostic biomarker in liver fibrosis.

Authors:  Pei-Wen Wang; Yu-Ching Hung; Tung-Ho Wu; Mu-Hong Chen; Chau-Ting Yeh; Tai-Long Pan
Journal:  Oncotarget       Date:  2017-10-06

Review 9.  Conceptual Foundations of Systems Biology Explaining Complex Cardiac Diseases.

Authors:  George E Louridas; Katerina G Lourida
Journal:  Healthcare (Basel)       Date:  2017-02-21

10.  Cardiopoietic stem cell therapy restores infarction-altered cardiac proteome.

Authors:  D Kent Arrell; Christian S Rosenow; Satsuki Yamada; Atta Behfar; Andre Terzic
Journal:  NPJ Regen Med       Date:  2020-03-12
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